BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0584.0055.p (165 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value slr1377 [U] COG0681 Signal peptidase I 139 3e-33 alr2975 [U] COG0681 Signal peptidase I 122 2e-28 sll0716 [U] COG0681 Signal peptidase I 112 4e-25 BS_sipT [U] COG0681 Signal peptidase I 107 7e-24 BS_sipS [U] COG0681 Signal peptidase I 105 3e-23 >slr1377 [U] COG0681 Signal peptidase I Length = 218 Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 67/153 (43%), Positives = 101/153 (66%), Gaps = 6/153 (3%) Query: 11 SIAIGIVLSLFIRTYVAEAMRVPTGSMIPTIQINDRLVVEKMLW-LTSLKHGDIVVFNPP 69 ++ ++L++ IRT+VAEA +P+ SM PT+QINDRL++EK+ + L + G+IVVFNP Sbjct: 27 TMVTAVILAIGIRTFVAEARYIPSSSMEPTLQINDRLIIEKISYRLRDPERGEIVVFNPT 86 Query: 70 ---VPGDEQKKYVKRLMGLPGDTLEIKDGALYRNGEQVDEPYLQEKMNYRFGPVTVPADH 126 + ++KR++GLPGD + + G +Y NG+ +DE Y+ Y +GPV VP D Sbjct: 87 DALKAKNFHDAFIKRIIGLPGDEVRVSQGNVYVNGKMLDENYIAAPPAYEYGPVKVPDDQ 146 Query: 127 YFFLGDNRNTSYDAHLWSTPFVAKDKLIGKVLL 159 Y LGDNRN SYD+H W FV ++KL+G+ + Sbjct: 147 YLVLGDNRNNSYDSHYWG--FVPREKLLGRAFV 177 >alr2975 [U] COG0681 Signal peptidase I Length = 359 Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 4/156 (2%), Positives = 29/156 (18%), Gaps = 12/156 (7%) Query: 12 IAIGIVLSLFIRTYVAEAMRVPTGSMIPTIQINDRLVVEKMLW-LTSLKHGDIVVFNPPV 70 + +V + + E R + + + + + + + + Sbjct: 28 KMVAVVKANAYGHGLLETARTLPDADAFGVARLEEALRLRAGGITKPVLLLEGFFDARDL 87 Query: 71 -------PGDEQKKYVKRLMGLPGDTLEIKDGALYRNGEQVDEPYLQEKMNYRFGPVTVP 123 + + + + + ++ + + Sbjct: 88 PTISAQHFHTA--VHNEEQLAALEEASLDEPVTVWMKLDTGMHRLGVRPEQAEAFYHRLT 145 Query: 124 ADHYFFLGDNRNTSYDAHLWSTPFVAKDKLIGKVLL 159 N + + + + Sbjct: 146 QCKNVRQPVNIVSHFARADEP--KCGATEKQLAIFN 179 >sll0716 [U] COG0681 Signal peptidase I Length = 196 Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 64/163 (39%), Positives = 103/163 (63%), Gaps = 8/163 (4%) Query: 3 KFLKQWVPSIAIGIVLSLFIRTYVAEAMRVPTGSMIPTIQINDRLVVEKMLW-LTSLKHG 61 +F+K+ +P + + +VL+L +R +VAE +P+ SM+PT++ DRLVVEK+ + + G Sbjct: 11 QFIKENIPLLMVALVLALLLRFFVAEPRYIPSDSMLPTLEQGDRLVVEKVSYHFHPPQVG 70 Query: 62 DIVVFNPP----VPG-DEQKKYVKRLMGLPGDTLEIKDGALYRNGEQVDEPYLQEKMNYR 116 DI+VF+PP V G D + ++KR++ LPG T+E+ +G +YR+G+ + E Y+ E Y Sbjct: 71 DIIVFHPPELLQVQGYDLGQAFIKRVIALPGQTVEVNNGIVYRDGQPLQEEYILEPPQYN 130 Query: 117 FGPVTVPADHYFFLGDNRNTSYDAHLWSTPFVAKDKLIGKVLL 159 V VP F +GDNRN S D+H+W F+ + +IG L Sbjct: 131 LPAVRVPDGQVFVMGDNRNNSNDSHVWG--FLPQQNIIGHALF 171 >BS_sipT [U] COG0681 Signal peptidase I Length = 193 Score = 107 bits (267), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 65/161 (40%), Positives = 94/161 (58%), Gaps = 17/161 (10%) Query: 7 QWVPSIAIGIVLSLFIRTYVAEAMRVPTGSMIPTIQINDRLVVEKML-WLTSLKHGDIVV 65 +W +I I ++L+L IR ++ E V SM PT+ +RL V K + ++ LK GDIV+ Sbjct: 22 EWGKAIVIAVLLALLIRHFLFEPYLVEGSSMYPTLHDGERLFVNKTVNYIGELKRGDIVI 81 Query: 66 FNPPVPGDEQK-KYVKRLMGLPGDTLEIKDGALYRNGEQVDEPYLQ------EKMNYR-- 116 N G+ K YVKRL+G PG+T+++KD LY NG++V EPYL EK+ Sbjct: 82 IN----GETSKIHYVKRLIGKPGETVQMKDDTLYINGKKVAEPYLSKNKKEAEKLGVSLT 137 Query: 117 --FGPVTVPADHYFFLGDNRNTSYDAHLWSTPFVAKDKLIG 155 FGPV VP YF +GDNR S D+ +A+D+++G Sbjct: 138 GDFGPVKVPKGKYFVMGDNRLNSMDSR-NGLGLIAEDRIVG 177 >BS_sipS [U] COG0681 Signal peptidase I Length = 184 Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 61/152 (40%), Positives = 87/152 (57%), Gaps = 17/152 (11%) Query: 2 KKFLKQWVPSIAIGIVLSLFIRTYVAEAMRVPTGSMIPTIQINDRLVVEKML-WLTSLKH 60 KK + +W +I I +VL+L IR ++ V SM PT+ +R+ V + ++ Sbjct: 9 KKSILEWAKAIVIAVVLALLIRNFIFAPYVVDGDSMYPTLHNRERVFVNMTVKYIGEFDR 68 Query: 61 GDIVVFNPPVPGDEQKKYVKRLMGLPGDTLEIKDGALYRNGEQVDEPYLQ---------- 110 GDIVV N GD+ YVKR++GLPGDT+E+K+ LY NG++VDEPYL Sbjct: 69 GDIVVLN----GDDVH-YVKRIIGLPGDTVEMKNDQLYINGKKVDEPYLAANKKRAKQDG 123 Query: 111 -EKMNYRFGPVTVPADHYFFLGDNRNTSYDAH 141 + + FGPV VP + YF +GDNR S D+ Sbjct: 124 FDHLTDDFGPVKVPDNKYFVMGDNRRNSMDSR 155 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.322 0.141 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 13,855,715 Number of extensions: 578285 Number of successful extensions: 1299 Number of sequences better than 1.0e-05: 27 Number of HSP's gapped: 1261 Number of HSP's successfully gapped: 27 Length of query: 165 Length of database: 38,378,431 Length adjustment: 98 Effective length of query: 67 Effective length of database: 27,075,699 Effective search space: 1814071833 Effective search space used: 1814071833 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 112 (47.8 bits)