BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0584.0038.p
         (202 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Cgl1131 [K] COG1309 Transcriptional regulator                          55   5e-08
RSc0635 [K] COG1309 Transcriptional regulator                          54   1e-07

>Cgl1131 [K] COG1309 Transcriptional regulator
          Length = 229

 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 55/123 (44%), Gaps = 16/123 (13%)

Query: 12  SGLRERKKDETRRTLIEIALNLAIERGVGQVRVEDIAAAANVSLRTFNNYFPSKEAAIIG 71
           +G R +K+++TR  LI  A  L  ERGV  V + +I   AN+   TF NYFP +E  +  
Sbjct: 21  TGRRAQKREQTRARLITSARTLMAERGVDNVGIAEITEGANIGTGTFYNYFPDREQLLQA 80

Query: 72  NAYQRSEKIAVALAD-----RPPGEALKDSLRAAVLAGFSEPADRQW--------LAHMI 118
            A    E + +AL         P E    SLR  V        DR W         AH +
Sbjct: 81  VAEDAFESVGIALDQVLTKLDDPAEVFAGSLRHLVRHSLE---DRIWGGFFIQMGAAHPV 137

Query: 119 LLR 121
           L+R
Sbjct: 138 LMR 140


>RSc0635 [K] COG1309 Transcriptional regulator
          Length = 216

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 4/92 (4%)

Query: 11  KSGLRERKKDETRRTLIEIALNLAIERGVGQVRVEDIAAAANVSLRTFNNYFPSKE---- 66
           + GLRERK+ +T + + +  L+L I +G     ++D+AAAA +S RTF +YF SK+    
Sbjct: 26  QDGLRERKRRDTLQRIAQTGLDLFIAKGYEATTLDDVAAAAGISRRTFFHYFTSKDEILL 85

Query: 67  AAIIGNAYQRSEKIAVALADRPPGEALKDSLR 98
           A  +G      + +  A  D+ P EAL  +L+
Sbjct: 86  AWQVGLVDALYDAVLQAATDQSPLEALCGALQ 117


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 13,541,626
Number of extensions: 507744
Number of successful extensions: 2289
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2290
Number of HSP's successfully gapped: 3
Length of query: 202
Length of database: 38,378,431
Length adjustment: 101
Effective length of query: 101
Effective length of database: 26,729,697
Effective search space: 2699699397
Effective search space used: 2699699397
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)