BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0584.0026.p
         (281 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPO3617 [G] COG1082 Sugar phosphate isomerases/epimerases             104   2e-22
mll1734 [G] COG1082 Sugar phosphate isomerases/epimerases             103   2e-22

>YPO3617 [G] COG1082 Sugar phosphate isomerases/epimerases
          Length = 299

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 99/199 (49%), Gaps = 5/199 (2%)

Query: 25  LQDYGIDFVQLALSKAIQDIDTSTGKLSPGLANYIAEQFDRAGIRIGVLGCYINPIHPDP 84
           ++  G+  VQL L     DID   G+++   A+ +   F RA I I  +  Y N +HPDP
Sbjct: 22  IKQAGMGCVQLDLE--FTDIDLRRGRITKEKAHQVRNAFRRANIPIVAISAYTNLVHPDP 79

Query: 85  AIRRLEIGRFKEHLRYARQFGAPMVATETGALTTFAE--FEPYRYEELGWETLRATVEEL 142
             R   I   KE L +AR FG P V +ETG   T ++  ++P    E  ++  +A  +EL
Sbjct: 80  VKRAENIAAVKEILAHARHFGTPYVISETGTYNTDSDWLYDPKNSTEEAYQEFKAIAKEL 139

Query: 143 AEEAEKWGVFLGLEGVSTHTLSTPAKVRRILDEVPSSAIGVVFDPCNLIGD-NVQNQDEI 201
           A  A +      +E    + + +  +V R++ EV    +G+  DP N   D N+   DE 
Sbjct: 140 ATFAYEHNAVFLVENYVNNIIGSVGQVARLMQEVEHPGLGLALDPTNYFDDKNIDAIDET 199

Query: 202 VDDAFSLFGDRIILAHLKD 220
           + + F++   RI +AH KD
Sbjct: 200 LHNIFNVLESRIKIAHAKD 218


>mll1734 [G] COG1082 Sugar phosphate isomerases/epimerases
          Length = 301

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 14/218 (6%), Positives = 38/218 (17%), Gaps = 7/218 (3%)

Query: 13  AGCLP--LKELTAALQDYGIDFVQLALSKAIQDIDTSTGKLSPGLANYIAEQFDRAGIRI 70
            G +    +              Q            +T     G+    A Q        
Sbjct: 8   CGFIAIVGRPNVGKSTLLNKLLGQKISI--TSRKAQTTRHRIVGIHTEGAYQAIYVDTPG 65

Query: 71  GVLGCYINPIHPDPAIRRLEIGRFKEHLRYARQFGAPMVATETGALTTFAEF--EPYRYE 128
             +                 IG  +  +                      +        +
Sbjct: 66  LHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNK 125

Query: 129 ELGWETLRATVEELAEEAEKWGVFLGLEGVSTHTLSTPAKVRRILDEVPSSAIGVVFDPC 188
               +     +  L   A +      +   +   L+       +   +P +      D  
Sbjct: 126 VDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYI 185

Query: 189 NLI-GDNVQNQDEIVDDAFSLFGDRIILAHLKDMYAEG 225
                  + ++         L  +      ++      
Sbjct: 186 TDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVS 223


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.322    0.139    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 21,327,130
Number of extensions: 921185
Number of successful extensions: 3105
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3105
Number of HSP's successfully gapped: 2
Length of query: 281
Length of database: 38,378,431
Length adjustment: 105
Effective length of query: 176
Effective length of database: 26,268,361
Effective search space: 4623231536
Effective search space used: 4623231536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 115 (48.9 bits)