BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0584.0007.p
         (77 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH0209 [C] COG1141 Ferredoxin                                          74   6e-14
BH2357 [C] COG1141 Ferredoxin                                          57   9e-09
BH1605 [C] COG1141 Ferredoxin                                          53   1e-07

>BH0209 [C] COG1141 Ferredoxin
          Length = 82

 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 50/76 (65%), Gaps = 2/76 (2%)

Query: 1  MNSFASVNQESCIACGACNSAAPDIFDLDYNGIAGVIYEGDKNRGITAIEPELLEELQEA 60
          M  F  V+Q++CIACGAC ++APDIFD D  G+A   Y  D N+G T I+P LL +L++A
Sbjct: 1  MPIFTIVDQDTCIACGACGASAPDIFDYDDEGLA--FYIADHNQGNTPIDPSLLNDLEDA 58

Query: 61 FVSCPTHCIQLAAVPF 76
             CPT  I+LA   F
Sbjct: 59 VEGCPTGSIKLAEEAF 74


>BH2357 [C] COG1141 Ferredoxin
          Length = 82

 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 51/76 (67%), Gaps = 2/76 (2%)

Query: 1  MNSFASVNQESCIACGACNSAAPDIFDLDYNGIAGVIYEGDKNRGITAIEPELLEELQEA 60
          M  +  V++E+CIACGAC +AAPD++D D  G+A VI   D N G+  +  +L+E++++A
Sbjct: 1  MAKYTIVDKETCIACGACGAAAPDVYDYDDEGLAYVIL--DDNEGVAEVPEDLIEDMEDA 58

Query: 61 FVSCPTHCIQLAAVPF 76
             CPT  I++A  PF
Sbjct: 59 LEGCPTDSIRVADEPF 74


>BH1605 [C] COG1141 Ferredoxin
          Length = 82

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 2/76 (2%)

Query: 1  MNSFASVNQESCIACGACNSAAPDIFDLDYNGIAGVIYEGDKNRGITAIEPELLEELQEA 60
          M  +  V++++CIACGAC +AAPDI+D D  GIA V    D N G   +  ELLE++ +A
Sbjct: 1  MPKYTIVDKDTCIACGACGAAAPDIYDYDDEGIAFVTL--DDNEGTVEVPDELLEDMIDA 58

Query: 61 FVSCPTHCIQLAAVPF 76
             CPT  I++A  PF
Sbjct: 59 QEGCPTDSIKVADEPF 74


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 5,444,454
Number of extensions: 185973
Number of successful extensions: 929
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 927
Number of HSP's successfully gapped: 3
Length of query: 77
Length of database: 38,378,431
Length adjustment: 48
Effective length of query: 29
Effective length of database: 32,842,399
Effective search space: 952429571
Effective search space used: 952429571
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)