BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0049.p (453 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_araN [G] COG1653 ABC-type sugar transport system, periplasmic... 100 5e-21 BH0905 [G] COG1653 ABC-type sugar transport system, periplasmic ... 94 4e-19 lin1841 [G] COG1653 ABC-type sugar transport system, periplasmic... 76 1e-13 slr1897 [G] COG1653 ABC-type sugar transport system, periplasmic... 69 2e-11 all1027 [G] COG1653 ABC-type sugar transport system, periplasmic... 61 4e-09 >BS_araN [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 433 Score = 100 bits (249), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 93/325 (28%), Positives = 153/325 (47%), Gaps = 39/325 (12%) Query: 50 ATDKAADPAEKIELSFWTLGNVN---YEELANAYTKEHPNVTIKIQNTGDQTAH-HNNLT 105 + +K++ + + EL+FWT ++ Y E+ + K++P+ IK+ H+NL+ Sbjct: 23 SAEKSSGKSGETELTFWTFSGLHEQFYVEMVKEWNKKYPDRKIKLNTVVYPYGQMHDNLS 82 Query: 106 TALSAGSGAPDIFQLEIGFMERFLSAQD-KFYNLNDYGAKDIQANYLDWKWKQASSVDGS 164 +L AG G PDI +E+ FL D +L KD + +++ + S +G Sbjct: 83 ISLIAGEGVPDIADVELARFSNFLKGSDIPLADLTPLIEKD-RDKFVEARLTLYSK-NGK 140 Query: 165 FQLGLPTDIGPTVVYYRTDLAKKAGL-PEDPDGFGAAIDTWDKFATVAKAYKDKIGKPF- 222 GL T +G TV++Y D+ KKAG+ P+D I TWD + + + GKP Sbjct: 141 L-YGLDTHVGTTVMFYNMDVMKKAGVNPDD-------IKTWDDYHKAGQKVRKVTGKPMG 192 Query: 223 -VDLTD-LTYNALRDQSNDEIYFSKADGKFIGDTNPQVKKAYDFTVKGIQEGWISNFMLW 280 V+ D T+ ++ Q N YF K +GK I + + VK T++ +++ M+ Sbjct: 193 TVETNDSATFLSMISQQNSG-YFDK-NGKLILNNDTNVK-----TLQYLKDMINDKTMIP 245 Query: 281 SPEWGQG-------MNDGSFAVIMGPAWMAGNIKSNAPDTSGKWKIAQLP---EG---AG 327 +P G MN G A ++ P W G PD GK I LP EG + Sbjct: 246 APGGGHHSEEYYGFMNQGGAASVLMPIWYMGRFIDYMPDLKGKIAIRPLPAWKEGGDRSA 305 Query: 328 NWGGSFITLPKEGKHPKEAYDFIQW 352 GG+ +PK+ KH + A +F+ + Sbjct: 306 GLGGTATVVPKQSKHVELAKEFLAF 330 >BH0905 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 445 Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 88/335 (26%), Positives = 151/335 (45%), Gaps = 38/335 (11%) Query: 40 GNNAASTNAPATDKAADPAE-KIELSFWTLGNVN---YEELANAYTKEHPNVTIK-IQNT 94 G++++S++A T D E EL FWT + +E+ ++ +E P+ IK + T Sbjct: 23 GSSSSSSDADETSVIGDDIEGATELIFWTFAGQHVDLFEDAVVSWNEEFPDRPIKLVAET 82 Query: 95 GDQTAHHNNLTTALSAGSGAPDIFQLEIGFMERFLSAQDKFYNLNDYGAKDIQANYLDWK 154 HNNL AL +GSGAPD+ +E+ FL + +ND+ + + +++ + Sbjct: 83 YPFDQMHNNLLLALQSGSGAPDLADIEVSRFPNFLQGVPQLLPMNDH-VEPVIDKFVEAR 141 Query: 155 WKQASSVDGSFQLGLPTDIGPTVVYYRTDLAKKAGLPEDPDGFGAAIDTWDKFATVAKAY 214 + + DG + G+PT +G +V+YY ++ +AG+ + +I+TWD + K Sbjct: 142 FNLYAK-DGEY-YGIPTHVGASVMYYNKEIMDEAGVDIE------SIETWDDYVEAGKQV 193 Query: 215 KDKIGKPFVDL-TDLTYNALRDQSNDEIYFSKADGKFIGDTNPQVKK---AYDFTVKGIQ 270 ++ GK + TD + S F +G DT ++ YD Sbjct: 194 VERTGKVMTTVPTDDYLPMFQMVSQRGSDFFDENGNLTLDTQENIEVLQFLYDLI----- 248 Query: 271 EGWISNFMLWSP-------EWGQGMNDGSFAVIMGPAWMAGNIKSNAPDTSGKWKIAQLP 323 ++ +P E+ Q MNDG+ A + P W G N PD +GK I LP Sbjct: 249 --YVHEIAELTPGGQPHAEEYYQYMNDGNVASMAMPIWYMGRFLDNMPDLAGKMLIQPLP 306 Query: 324 ---EG---AGNWGGSFITLPKEGKHPKEAYDFIQW 352 EG + GG+ + + H + A DF+ + Sbjct: 307 AWEEGGFRSAGMGGTGTVVTNQTDHEELAKDFLAY 341 >lin1841 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 414 Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 93/341 (27%), Positives = 152/341 (44%), Gaps = 38/341 (11%) Query: 55 ADPAEKIELSFWTLGNV--NYEELANAYTKEHPNVTIKIQNTGDQTAHHNNLTTALSAGS 112 A+ ++ L+ W +G+ + +ELA +TK+ + +K+Q AH + L TA+++ S Sbjct: 29 ANSSDSKVLNVWAMGDEAKSLKELAQKFTKDT-GIEVKVQVIPWANAH-DKLLTAVASKS 86 Query: 113 GAPDIFQLEIGFMERFLSAQDKFYNLNDY-GAKDIQANYLDWKWKQASSVDGSFQLGLPT 171 G PD+ Q+ +M F+ A D +K++ ++ + + DG G+P Sbjct: 87 G-PDVVQMGTTWMPEFVEAGALLDITKDVEKSKNMNSDLFFPGSVKTTQFDGK-TYGVPW 144 Query: 172 DIGPTVVYYRTDLAKKAGLPEDPDGFGAAIDTWDKFATVA----KAYKDKIGKPFVDLTD 227 V++YRTDL KK G E P TWD+ + A K KD G +D + Sbjct: 145 YAETRVLFYRTDLLKKVGYNEAPK-------TWDELSDAALKLSKRGKDMYGFA-IDPNE 196 Query: 228 LTYNALRDQSNDEIYFSKADGKFIGDTNPQVKKAYDFTVKGIQEGWISNFMLWSPEWGQG 287 T + + N F K DG + + P V TV + + +I N +P+ G Sbjct: 197 QTTGFIFGRQNGSPLFDK-DGTPVFNKKPFVD-----TVTYL-DSFIKNGS--APDTDLG 247 Query: 288 MN-------DGSFAVIMGPAWMAGNIKSNAPDTSGKWKIAQLPEGAGN---WGGSFITLP 337 ++ DG + M WM +K APD GKW A LP+ N GG+ +++ Sbjct: 248 LDASQSFGGDGIVPMFMSGPWMVNTLKDTAPDIDGKWATAVLPKKENNESSLGGANLSIF 307 Query: 338 KEGKHPKEAYDFIQWLVNKDNQLESFKTKGLMPSIPALYED 378 K +A F+ ++ D QL K MP+ +ED Sbjct: 308 KYSNKKDDALKFMDYMSQPDVQLSWLKDTNSMPARMDAWED 348 >slr1897 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 433 Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 78/326 (23%), Positives = 144/326 (44%), Gaps = 31/326 (9%) Query: 62 ELSFWTLG-----NVNYEELANAYTKEHPNVTIKIQNTGDQTAHHNNLTTALSAGSGAPD 116 ++SFWT+ N +++L + + + +P + + A + + +A+SA + APD Sbjct: 40 KVSFWTMQLQPKFNKYFDDLISTFERNNPPEQVSWVDI-PWNAMESKILSAVSANT-APD 97 Query: 117 IFQLEIGFMERFLSAQDKFYNLNDYGAKDIQANYLDWKWKQASSVDGSFQLGLPTDIGPT 176 + L F L++++ + NL + + +++A YL W QA+S+ G P + Sbjct: 98 VVNLNPTF-SSLLASKNAWLNLEEEVSAEVKARYLPSIW-QANSLGNGEVFGFPWYLTTR 155 Query: 177 VVYYRTDLAKKAGLPEDPDGFGAAIDTWDKFATVAKAYKDKIGKP--FVDLTDL-TYNAL 233 + Y DL ++AGL P F + A A+ K K GK FV + + AL Sbjct: 156 ITIYNQDLLQQAGLSTPPATFA-------ELAVAAREIKAKTGKYGFFVTFSPSDSAEAL 208 Query: 234 RDQSNDEIYFSKADGKFIGDTNPQVKKAYDFTVKGIQEGWISNFMLWSPEWGQG--MNDG 291 + +DG+ ++ P K A+ + V Q+G + +L G G Sbjct: 209 ESLVQMGVQLVDSDGRATFNS-PAGKVAFQYWVDLYQQGLLPPEVLTEGHRRAGDLYQSG 267 Query: 292 SFAVIMGPAWMAGNIKSNAPDTSGKWKI-AQLPEGAGNWGGSFI-----TLPKEGKHPKE 345 + A + + +++ NAP + K+ A P+ G G + +P+ K+P Sbjct: 268 AIAFLSAGPELLASLEKNAPSIA---KVSAAAPQIVGETGKRNVAVMNLVIPRSTKNPTG 324 Query: 346 AYDFIQWLVNKDNQLESFKTKGLMPS 371 A F +++ N DNQ K ++PS Sbjct: 325 AIKFAEFVTNTDNQFAFIKEANVLPS 350 >all1027 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 432 Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 80/292 (27%), Positives = 131/292 (44%), Gaps = 42/292 (14%) Query: 99 AHHNNLTTALSAGSGAPDIFQLEIGFMERFLSAQDKFYNLNDYGAKDIQANYLDWKWKQA 158 A N + TA+SA + PD+ L F + L+ ++ + +L+ ++ +++YL WK A Sbjct: 85 AMENKILTAVSAKT-PPDVVNLNPDFASQ-LAGRNAWLDLDTKVPQEARSSYLPNIWK-A 141 Query: 159 SSVDGSFQLGLPTDIGPTVVYYRTDLAKKAGLPEDPDGFGAAIDTWDKFATVAKAYKDKI 218 S+++G G+P + + Y TDL K+AG+ + P T+ + A A+ KDK Sbjct: 142 STLNGK-SFGVPWYLTTRLTIYNTDLLKQAGISKPP-------ATYAELAQAAQQIKDKT 193 Query: 219 GKPFVDLTDLTYNALRDQSNDEIYFSKAD-GKFIGDT-------NPQVKKAYDFTVKGIQ 270 GK +T Q + E+ S G + DT +PQ K A+ + V + Sbjct: 194 GKYAFFVT------FVPQDSGEVLQSFVQMGATLVDTEGKAAFNSPQGKAAFQYWVDLYK 247 Query: 271 EGWISNFMLWSPEWGQG-------MNDGSFAVIM-GPAWMAGNIKSNAPDTSGKWKIA-Q 321 +G + L QG G A + GP ++ I +NAP + IA Q Sbjct: 248 KGLLPKEAL-----TQGHRHAIDLYQSGETAFLASGPEFL-KTITTNAPKVAQASAIAPQ 301 Query: 322 LP--EGAGNWGGSFITLPKEGKHPKEAYDFIQWLVNKDNQLESFKTKGLMPS 371 L G N I +P++ K P A F ++ N +NQL K ++PS Sbjct: 302 LTGDTGKKNVAVMNIVVPRDTKQPDAAVKFALFVTNDENQLAFAKAANVLPS 353 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.312 0.131 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 33,741,959 Number of extensions: 1480879 Number of successful extensions: 2533 Number of sequences better than 1.0e-05: 10 Number of HSP's gapped: 2526 Number of HSP's successfully gapped: 10 Length of query: 453 Length of database: 38,378,431 Length adjustment: 110 Effective length of query: 343 Effective length of database: 25,691,691 Effective search space: 8812250013 Effective search space used: 8812250013 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 117 (49.7 bits)