BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0047.p (287 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin0219 [G] COG0395 ABC-type sugar transport system, permease co... 181 2e-45 AGpA798 [E] COG0410 ABC-type branched-chain amino acid transport... 177 1e-44 AGpA799 [R] COG0388 Predicted amidohydrolase 177 1e-44 AGpA795 [E] COG4177 ABC-type branched-chain amino acid transport... 177 1e-44 AGpA797 [R] COG4674 Uncharacterized ABC-type transport system, A... 177 1e-44 >lin0219 [G] COG0395 ABC-type sugar transport system, permease component Length = 282 Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 93/284 (32%), Positives = 152/284 (53%), Gaps = 2/284 (0%) Query: 4 LRTYKKNPDDLGLFGKFWFYVLMILGALVSIFPFYWMFVVGTNDKGAVFHVPPLLTIGDQ 63 ++T K L Y ++ LG ++ + PF WM A +PP + Sbjct: 1 MKTEKSGSPKWQLIKNILTYTIICLGGIIMLMPFVWMISTAFKTGAANMVLPPQFIPKEP 60 Query: 64 FIDNFKRVLDKADFFQALGNSLFVSSMVTISVVFFCTLAGYAFAKYEFPFKNVLFYFVIA 123 NF +V + + L NS+ V+ + T+ + FC++A YAFA+ F ++ LF +A Sbjct: 61 TTANFTQVFEMFPMLRFLMNSVVVAVVTTLGQMLFCSMAAYAFARIPFWGRDKLFLLYLA 120 Query: 124 TLFVPQQLGVLPTYVIMAKLHWIDSFKALIVPAMVNAFGIFWMRQYISTAVHTELIEAGR 183 T+ VP Q+ ++P +++M + W+DS+ LIVPA+ + FG F +RQ + EL EA Sbjct: 121 TMMVPAQVTMIPQFILMKQFGWLDSYAGLIVPALFSVFGTFLLRQAF-MGIPKELEEAAF 179 Query: 184 IDGGGHFRIFWNIAIPVITPAMATLGILNFMTVWNDFFWPLVVLKNKEHFTIQIALQQLF 243 +DG HF IF + +P+ P ATLGIL FM WN + WPL+V ++E T+ + L L Sbjct: 180 MDGANHFTIFRKVILPLAKPTFATLGILTFMQSWNSYLWPLIVTSSQEMATLPLGL-SLL 238 Query: 244 TTRDGLDYGMIMSATFTATLPLLVVFLLFSRWVIAGLTSGAVKS 287 R G +YG++M+ + +P+L V+L ++ I G+ +K Sbjct: 239 QGRYGTNYGLMMAGVLISVIPILAVYLFAQKYFIQGMAMSGMKE 282 >AGpA798 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Length = 373 Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 13/225 (5%), Positives = 33/225 (14%), Gaps = 4/225 (1%) Query: 65 IDNFKRVLDKADFFQALGNSLFVSSMVTISVVFFCTLAGYAFAKYEFPFKNVLFYFVIAT 124 + A+ +S + S A + + Sbjct: 46 GVLGCAGIAAKAVIPAIQSSRLGRVVAIASRDAAKAKEMTARFGIARSYGSYEDLLADPE 105 Query: 125 LFVPQQLGVLPTYVIMAKLHWIDSFKALIVPAMVNAFGIFWMRQYISTAVHTELIEAGRI 184 + +V M L + + + + Sbjct: 106 IDAIYNPLPNHLHVPMTIKALEQGKPVLCEKPIALDAAQARELATAQ-KAASLPVAEAFM 164 Query: 185 DGGGHFRIFWNIAIPVITPAMATLGILNFMTVWNDFFWPLVVLKNKEHFTIQIALQQLFT 244 + I F +D + + + T Sbjct: 165 VRHHPQWKKAHALITEGRLGEVRAIQTIFSYYLDDPGNVRNQVDIGGGGLFDVGCYAINT 224 Query: 245 TRDG---LDYGMIMSATFTATLPLLVVFLLFSRWVIAGLTSGAVK 286 R I + + + Sbjct: 225 ARFLFDAEPLRAIALMERDPVFGTDRLTSGLLAFPEGKQLAFTCS 269 >AGpA799 [R] COG0388 Predicted amidohydrolase Length = 373 Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 13/225 (5%), Positives = 33/225 (14%), Gaps = 4/225 (1%) Query: 65 IDNFKRVLDKADFFQALGNSLFVSSMVTISVVFFCTLAGYAFAKYEFPFKNVLFYFVIAT 124 + A+ +S + S A + + Sbjct: 46 GVLGCAGIAAKAVIPAIQSSRLGRVVAIASRDAAKAKEMTARFGIARSYGSYEDLLADPE 105 Query: 125 LFVPQQLGVLPTYVIMAKLHWIDSFKALIVPAMVNAFGIFWMRQYISTAVHTELIEAGRI 184 + +V M L + + + + Sbjct: 106 IDAIYNPLPNHLHVPMTIKALEQGKPVLCEKPIALDAAQARELATAQ-KAASLPVAEAFM 164 Query: 185 DGGGHFRIFWNIAIPVITPAMATLGILNFMTVWNDFFWPLVVLKNKEHFTIQIALQQLFT 244 + I F +D + + + T Sbjct: 165 VRHHPQWKKAHALITEGRLGEVRAIQTIFSYYLDDPGNVRNQVDIGGGGLFDVGCYAINT 224 Query: 245 TRDG---LDYGMIMSATFTATLPLLVVFLLFSRWVIAGLTSGAVK 286 R I + + + Sbjct: 225 ARFLFDAEPLRAIALMERDPVFGTDRLTSGLLAFPEGKQLAFTCS 269 >AGpA795 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Length = 373 Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 13/225 (5%), Positives = 33/225 (14%), Gaps = 4/225 (1%) Query: 65 IDNFKRVLDKADFFQALGNSLFVSSMVTISVVFFCTLAGYAFAKYEFPFKNVLFYFVIAT 124 + A+ +S + S A + + Sbjct: 46 GVLGCAGIAAKAVIPAIQSSRLGRVVAIASRDAAKAKEMTARFGIARSYGSYEDLLADPE 105 Query: 125 LFVPQQLGVLPTYVIMAKLHWIDSFKALIVPAMVNAFGIFWMRQYISTAVHTELIEAGRI 184 + +V M L + + + + Sbjct: 106 IDAIYNPLPNHLHVPMTIKALEQGKPVLCEKPIALDAAQARELATAQ-KAASLPVAEAFM 164 Query: 185 DGGGHFRIFWNIAIPVITPAMATLGILNFMTVWNDFFWPLVVLKNKEHFTIQIALQQLFT 244 + I F +D + + + T Sbjct: 165 VRHHPQWKKAHALITEGRLGEVRAIQTIFSYYLDDPGNVRNQVDIGGGGLFDVGCYAINT 224 Query: 245 TRDG---LDYGMIMSATFTATLPLLVVFLLFSRWVIAGLTSGAVK 286 R I + + + Sbjct: 225 ARFLFDAEPLRAIALMERDPVFGTDRLTSGLLAFPEGKQLAFTCS 269 >AGpA797 [R] COG4674 Uncharacterized ABC-type transport system, ATPase component Length = 373 Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 13/225 (5%), Positives = 33/225 (14%), Gaps = 4/225 (1%) Query: 65 IDNFKRVLDKADFFQALGNSLFVSSMVTISVVFFCTLAGYAFAKYEFPFKNVLFYFVIAT 124 + A+ +S + S A + + Sbjct: 46 GVLGCAGIAAKAVIPAIQSSRLGRVVAIASRDAAKAKEMTARFGIARSYGSYEDLLADPE 105 Query: 125 LFVPQQLGVLPTYVIMAKLHWIDSFKALIVPAMVNAFGIFWMRQYISTAVHTELIEAGRI 184 + +V M L + + + + Sbjct: 106 IDAIYNPLPNHLHVPMTIKALEQGKPVLCEKPIALDAAQARELATAQ-KAASLPVAEAFM 164 Query: 185 DGGGHFRIFWNIAIPVITPAMATLGILNFMTVWNDFFWPLVVLKNKEHFTIQIALQQLFT 244 + I F +D + + + T Sbjct: 165 VRHHPQWKKAHALITEGRLGEVRAIQTIFSYYLDDPGNVRNQVDIGGGGLFDVGCYAINT 224 Query: 245 TRDG---LDYGMIMSATFTATLPLLVVFLLFSRWVIAGLTSGAVK 286 R I + + + Sbjct: 225 ARFLFDAEPLRAIALMERDPVFGTDRLTSGLLAFPEGKQLAFTCS 269 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.332 0.145 0.464 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,706,177 Number of extensions: 820090 Number of successful extensions: 2678 Number of sequences better than 1.0e-05: 148 Number of HSP's gapped: 2419 Number of HSP's successfully gapped: 148 Length of query: 287 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 182 Effective length of database: 26,268,361 Effective search space: 4780841702 Effective search space used: 4780841702 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 115 (48.9 bits)