BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0045.p (461 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yurO [G] COG1653 ABC-type sugar transport system, periplasmic... 133 7e-31 PH1214 [G] COG1653 ABC-type sugar transport system, periplasmic ... 115 2e-25 SMa2305 [G] COG1653 ABC-type sugar transport system, periplasmic... 79 2e-14 PAE1324 [G] COG1653 ABC-type sugar transport system, periplasmic... 70 8e-12 APE0035 [G] COG1653 ABC-type sugar transport system, periplasmic... 67 7e-11 >BS_yurO [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 422 Score = 133 bits (334), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 113/443 (25%), Positives = 211/443 (47%), Gaps = 31/443 (6%) Query: 23 ILLYIVLMSGAVLYIMQGGREPIEDNSQEKITLTFRHFWIKEHDRPLLAIFEEVVKEYQG 82 +LL++++ + ++L I G ++ K+TL F H W KE P + FEEVVKE++ Sbjct: 4 MLLFLIIAAVSMLTI--AGCSSQSSSADGKVTLKFFHRWPKE---PEKSYFEEVVKEFEK 58 Query: 83 AHPNVKVNFEGLDQTIHREQKLKSEMVTGTPPDMFVLFGGAEIEPYVRSNRLMDLTDFAQ 142 HP++ + E + +++ K+K + T +PPD++ + ++R N+ +DL+ + + Sbjct: 59 DHPDIDIQIEAVLNDSYKD-KIKVMLGTTSPPDIYFSWSDEFAFKFIRGNKALDLSSYYK 117 Query: 143 -ENGLKDQFKDLHL--WTFNNHIYGLPIEGNAEPLYYNRTVFNKLGIKVPGTLAELDAAI 199 + Q + +T+ N YG+P + +A+ +YN+ +F KL + P T EL Sbjct: 118 NDTDWSSQLVQSQITPFTYENKQYGVPWQMDAKSFFYNKDIFQKLNLDPPKTWDELIDVS 177 Query: 200 VQLKLQGYIPFALGNEDRWPAGIFAHYLMDRYAGPDLIQKLVTGKDGASFGNSYYKQAFR 259 +LK GY P + G + W + L R +K K G Y K + Sbjct: 178 KKLKEHGYTPISFGTKATWTISHYIGTLNQRMVDEKTREKDYNAKTGEFTDEGYVKALEK 237 Query: 260 HFGLWVHENAFSPDSNNTSTENAVRLFTSGKAAMYLNGNWDINLFSGENAPADFQNEVGV 319 L + F+ N+ E + F SGK+AM +I L N +G+ Sbjct: 238 LQELMPY---FNKHVNSVDHEYVRQQFKSGKSAMIYAETAEIKLVEPVN--------LGM 286 Query: 320 IPFPALDGGEKASIA-GGYTIGIGLSSSLTGAKREAALELMKALYTQETQKRIVYEGLRI 378 PFP + G + +S A G G +SS K A+E ++ L ++ +++V + + Sbjct: 287 FPFPEISGQKGSSEALTGAPEGFMISSRTKHPKE--AMEFLQFLTSKRMGEKLVKDVGKY 344 Query: 379 PSMRIT-FDPNKTGPVFAQVMELMENNQQSFVP-YDNLLSPEVKKTFLSVIEEMIDGGLQ 436 +++ T + N T V ++ + +S VP +D + EV +L+ +++M+ G + Sbjct: 345 SAVQGTATEENATAIQREAVQHIV--DAKSMVPWFDMDVDVEVADAYLTGVQQMLGGDMT 402 Query: 437 GDEALKELQAASRQYWKLIRSSA 459 + +K +Q A++Q +R+SA Sbjct: 403 PQQVMKAVQKAAKQ----VRASA 421 >PH1214 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 441 Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/310 (27%), Positives = 151/310 (48%), Gaps = 23/310 (7%) Query: 24 LLYIVLMSGAVLYIMQGGREPIED--NSQEKITLTFRHFWIKEHDRPLLAIFEEVVKEYQ 81 L+ V+ SG + G + P +Q+ L H+W ++ F+ + K+++ Sbjct: 15 LVISVVASGCI----GGSQTPTSSPTKTQQVQELEIYHWWTAGGEK---EAFDALAKKFE 67 Query: 82 GAHPNVKVNFEGLDQT--IHREQKLKSEMVTGTPPDMFVLFGGAEIEPYVRSNRLMDLTD 139 +PN+K+ + ++ + L+S M+ G PPD F + G E+ Y+++N+L + D Sbjct: 68 KKYPNIKIKANPVSGGGGVNLKMVLQSLMLAGKPPDTFQVHAGYEMARYIKANQLTPIDD 127 Query: 140 FAQENGLKDQFKDLH-LWTFNNHIYGLPIEGN-AEPLYYNRTVFNKLGIKVPGTLAELD- 196 E+ K+ K + + FNNH Y +PI + A ++YN+ +F K GI P ++ +D Sbjct: 128 IWTEDMKKNYPKVIQQMVIFNNHYYAVPINVHRANVIWYNKQIFKKYGID-PSSIKTIDD 186 Query: 197 --AAIVQLKLQGYIPFALGNEDRWPAGIFAHYLMDRYAGPDLIQKLVTGKDGASFGNSYY 254 A +LK G PFALG+ ++WPA ++ G D +K + G+ A+ + Sbjct: 187 LFAVAEKLKENGVTPFALGDRNKWPATQVFEVMLVAVGGVDYYEKFINGEISAN--DPTL 244 Query: 255 KQAFRHFGLWVHENAFSPDSNNTSTENAVRLFTSGKAAMYLNGNWDINLFSGENAPADFQ 314 K+ +F +V + +PD + + A L G+AAM L G+W F + + Sbjct: 245 KKVLEYFVKYVEYS--NPDHAAKTWDEACALVYKGEAAMTLMGDWANGYFKAKGWKPNV- 301 Query: 315 NEVGVIPFPA 324 + G IP PA Sbjct: 302 -DYGAIPIPA 310 >SMa2305 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 459 Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 86/376 (22%), Positives = 152/376 (40%), Gaps = 19/376 (5%) Query: 82 GAHPNVKVNFEGLDQTIHREQKLKSEMVTGTPPDMFVLFGGAEIEPYVRSNRLMDLTDFA 141 G KV +D H+ +++ +V G P D+ F G + +V D++D Sbjct: 100 GKAAGTKVVVNNMDHEAHK-TAIRNYLVAGAP-DVCFWFSGNRMRAFVTRGLFDDISDLF 157 Query: 142 QENGLKDQF-KDLHLWTFNNHIYGLPIEGNAEPLYYNRTVFNKLGIKVPGTLAELDAAIV 200 ++ D T YGLP G ++Y + VF++ G+KVP + +L A Sbjct: 158 EKEKYADVLGATAGSVTVEGKQYGLPTGGTLWGMFYRKDVFDEHGLKVPTSWDDLLAFGE 217 Query: 201 QLKLQGYIPFALGNEDRWPAGIFAHYLMDRYAGPDLIQKLVTGKDGASFGNSYYKQAFRH 260 + K P A+G +D WPA + + R G D L+ G+ ++ + K F H Sbjct: 218 KCKSASLTPVAMGTKDLWPAAGWFDQMNLRINGLDKHFALMNGE--MAYTDETLKPVFEH 275 Query: 261 FGLWVHENAFSPDSNNTSTENAVRLFTSGKAAMYLNGNWDINLFSGENAPADFQNEVGVI 320 + + + F+PD + + A +A M G + F ++ P ++ Sbjct: 276 WEELIKQGFFTPDHTSFGWQEAGAFLAQKRAGMMNLGAFVRAAFPRQDLP-----QLTFA 330 Query: 321 PFPALDGGEKASIAGGY-TIGIGLSSSLTGAK-REAALELMKALYTQETQKRIVYEGLRI 378 PFP ++ G G Y + T AK + A E + Y E + G + Sbjct: 331 PFPVIEDG-----LGRYEEFSLNSVHIPTNAKNKPGAREFLTHFYKPENLAAYLEPGGNV 385 Query: 379 PSMRITFDPNKTGPVFAQVMELMENNQQSFVPYDNLLSPEVKKTFLSVIEEMIDGGLQGD 438 P R P+K P+ +E ++ + YD P++ + L +E + + D Sbjct: 386 PP-RNDLPPSKD-PLVNAAVESLKAVAGTSQFYDRDTDPDMAQAGLVGFQEFMARPERRD 443 Query: 439 EALKELQAASRQYWKL 454 L+ L+ R+ +KL Sbjct: 444 AILQRLEGTRRRIFKL 459 >PAE1324 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 437 Score = 70.1 bits (170), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 88/385 (22%), Positives = 152/385 (39%), Gaps = 46/385 (11%) Query: 73 FEEVVKEYQGAHPNVKVNF-----EGLDQTIHREQKLKSEMVTGTPPDMFVLFGGAEIEP 127 F++V+ EYQ +PNV+ + E + Q + + + K P D+ + G + Sbjct: 79 FKQVLDEYQKINPNVEFEYVTRRAEEIAQILPTQLEAKQ-----APADVVITSFGWFVVE 133 Query: 128 YVRSNRLMDLTDFAQEN----GLKDQFKDLHLWTFNNHIYGLPIEGNAEP-LYYNRTVFN 182 + ++DLT+ N G+ D T+ I+ P +P +Y ++ F Sbjct: 134 MAKRGHVVDLTNVINPNEYVTGIFDPV------TYEGKIWATPFTIVLKPGFWYRKSFFQ 187 Query: 183 KLGIKVPGTLAELDAAIVQLKLQGYIPFALGNEDRWPAGIFAHYLMDRYAGPDLIQKLVT 242 + G+ P T E + +LK G P A G+ WP + YAGPD+ + L Sbjct: 188 QHGLSEPQTWDEFLQLLKRLKEIGVTPIASGDGVGWPLSDVTEAFIIAYAGPDVFRGLTE 247 Query: 243 GKDGASFGNSYYKQAFR-HFGLWVHENAFSPDSNNTSTENAVRLFTSGKAAMYLNGNWDI 301 K F + FR L + E F T AV + +G +Y G W + Sbjct: 248 KK--VKFDDPRINAVFRDRISLLLREGYFGEPEEWT---QAVEKWWNGTYGIYFMGTWIL 302 Query: 302 NLFSGENAPADFQNEVGVIPFPALDGGEKASIAGGYT-IGIGLSSSLTGAKREAALELMK 360 + D ++VG P P E I GG I + + S + R A+E ++ Sbjct: 303 GM-------VDNPDDVGFFPMP-----ETKGITGGTDYIFVPVYSPV----RNEAVEFVQ 346 Query: 361 ALYTQETQKRIVYEGLRIPSMRITFDPNKTGPVFAQVMELMENNQQSFVP-YDNLLSPEV 419 L T+ + + ++PS DPNK V + +P D+ + + Sbjct: 347 WLATKGQEVHSSTKAGKLPSWTKA-DPNKIWAPLRDVYQKTVGKGMVLLPDLDDTIGGDW 405 Query: 420 KKTFLSVIEEMIDGGLQGDEALKEL 444 +K F ++ + + D+ +K L Sbjct: 406 QKLFWDQLKLLWVSPDKWDDVVKTL 430 >APE0035 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 452 Score = 67.0 bits (162), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 84/365 (23%), Positives = 152/365 (41%), Gaps = 50/365 (13%) Query: 51 EKITLTFRHFWIKEHDRPLLAIFEEVVKEYQGAHPNVKVNFEGLD-QTIHREQKLKSEMV 109 EK+TLT W + + E+ ++E +PNV + + + + + R ++ E Sbjct: 72 EKVTLTVIGPWSGKEQEYFMTALEKFMEE----NPNVTIKYVPMRAEEVARTLSVQFEAG 127 Query: 110 TGTPPDMFVLFGGAEIEPYVRSNRLMDLTDFAQEN----GLKDQFKDLHLWTFNNHIYGL 165 TP D+ + I + ++++T E+ G+ D K +NN ++G+ Sbjct: 128 V-TPADVVITPWAWWIVEMAQKGHVIEVTGLINEDEYVGGILDNVK------WNNKLWGV 180 Query: 166 PIEGNAEP-LYYNRTVFNKLGIKVPGTLAELDAAIVQLK-LQGYI-PFALGNEDRWPAGI 222 P +P +Y ++ F K G+ P + E + Q+K ++G P G+ WP Sbjct: 181 PFTMWLKPGFWYKKSFFAKHGLSEPNSWEEFLQLLDQIKGIEGIKNPIVSGDSVGWPLSD 240 Query: 223 FAHYLMDRYAGPDLIQKLVTGKDGASFGNSYYKQAFRHFGLWVHENAFSPDSNNTSTENA 282 + + + GP+L KL+TG+ SF + + F + + + FS TS A Sbjct: 241 VTEHFIIAFGGPELQYKLITGE--VSFTDPQVVEIFEKLAMLIEQGYFSEPIEWTS---A 295 Query: 283 VRLFTSGKAAMYLNGNWDINLFSGENAPADFQNEVGVIPFP---ALDGGEKASIAGGYTI 339 V + + + A+Y G W + N A F P P + GG + YT Sbjct: 296 VEKWWAEEYALYFMGTWITGMVEDPNDLAFF-------PLPGARGVVGGTDYAFIPKYT- 347 Query: 340 GIGLSSSLTGAKREAALELMKALYTQETQKRIVYEGLRIPS-MRITFD---PNKTGPVFA 395 EAA L++ L T+ + ++P+ + ++ D P G VFA Sbjct: 348 ----------ENLEAAKLLLQYLATEGQAVHVSTPAGKVPTWLGVSVDQLWPPMQG-VFA 396 Query: 396 QVMEL 400 ++ EL Sbjct: 397 KIKEL 401 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.137 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 35,829,726 Number of extensions: 1555459 Number of successful extensions: 2880 Number of sequences better than 1.0e-05: 17 Number of HSP's gapped: 2880 Number of HSP's successfully gapped: 17 Length of query: 461 Length of database: 38,378,431 Length adjustment: 110 Effective length of query: 351 Effective length of database: 25,691,691 Effective search space: 9017783541 Effective search space used: 9017783541 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 118 (50.1 bits)