BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0039.p (200 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yocG [TK] COG2197 Response regulator containing a CheY-like r... 280 8e-76 BS_yvfU [TK] COG2197 Response regulator containing a CheY-like r... 201 4e-52 BH0581 [TK] COG2197 Response regulator containing a CheY-like re... 200 1e-51 SP2000 [TK] COG2197 Response regulator containing a CheY-like re... 172 2e-43 SA1159 [TK] COG2197 Response regulator containing a CheY-like re... 162 3e-40 >BS_yocG [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 199 Score = 280 bits (717), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 138/200 (69%), Positives = 162/200 (81%), Gaps = 1/200 (0%) Query: 1 MIKIVIAEDQRMXXXXXXXXXXXXXXMKVVGRAANGEEAVKLVQQHQPDICIMDIEMPAM 60 MI I IAEDQ+M M+VVG+ G++AV V++ QPD+CIMDIEMP Sbjct: 1 MISIFIAEDQQMLLGALGSLLNLEDDMEVVGKGTTGQDAVDFVKKRQPDVCIMDIEMPGK 60 Query: 61 SGLEAAEALKDSGCKIMILTTFARAGYFERAVKAGVDAYLLKDSPSEELALSIRSVMSGK 120 +GLEAAE LKD+GCKI+ILTTFAR GYF+RA+KAGV YLLKDSPSEELA +IRSVM+GK Sbjct: 61 TGLEAAEELKDTGCKIIILTTFARPGYFQRAIKAGVKGYLLKDSPSEELANAIRSVMNGK 120 Query: 121 RLYAPELMDEAYSGEANPLTQREKEVLGLIADGKNTKEIASQLYITTGTVRNYISVILDK 180 R+YAPELM++ YS EANPLT REKEVL L+ADGKNTKEIA +L I +GTVRNYIS+IL+K Sbjct: 121 RIYAPELMEDLYS-EANPLTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEK 179 Query: 181 LDVGNRIEAITRFKEKGWFK 200 L+V NRIEAITR KEKGWFK Sbjct: 180 LEVKNRIEAITRSKEKGWFK 199 >BS_yvfU [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 200 Score = 201 bits (512), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 106/201 (52%), Positives = 134/201 (66%), Gaps = 3/201 (1%) Query: 1 MIKIVIAEDQRMXXXXXXXXXXXXXXMKVVGRAANGEEAVKLVQQHQPDICIMDIEMPAM 60 MI++ IAEDQRM M V+G+A NGEEA+ + + +PD+CIMDIEMP Sbjct: 1 MIRLFIAEDQRMLLGALGSLLDLEEDMTVIGQALNGEEALHAILKLEPDVCIMDIEMPVR 60 Query: 61 SGLEAAEALKDSGC--KIMILTTFARAGYFERAVKAGVDAYLLKDSPSEELALSIRSVMS 118 SGL AE L GC K++ILTTFAR GYFERAVKAG YLLKD ++LA +IR + Sbjct: 61 SGLNVAEELMKKGCVSKVIILTTFARPGYFERAVKAGAHGYLLKDGEIDDLADAIRKCVK 120 Query: 119 GKRLYAPELMDEAYSGEANPLTQREKEVLGLIADGKNTKEIASQLYITTGTVRNYISVIL 178 GKR+++PEL E NPLT RE+E+L L A GK TK+I +LY++ GTVRNYIS I+ Sbjct: 121 GKRVFSPELTFNMMRDE-NPLTVREQEILRLAALGKTTKDITLELYLSQGTVRNYISEII 179 Query: 179 DKLDVGNRIEAITRFKEKGWF 199 KL+ NR EA + +EKGW Sbjct: 180 QKLNAKNRTEAASIAEEKGWI 200 >BH0581 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 201 Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 98/201 (48%), Positives = 138/201 (68%), Gaps = 2/201 (0%) Query: 1 MIKIVIAEDQRMXXXXXXXXXXXXXXMKVVGRAANGEEAVKLVQQHQPDICIMDIEMPAM 60 MI+IVIAEDQ M +K+V +A NG EA+ +++HQPD+CI+DIE+P M Sbjct: 1 MIRIVIAEDQTMLLGAMTALLQLEDDIKIVAQARNGLEALAAIEKHQPDLCILDIELPNM 60 Query: 61 SGLEAAEALKDS--GCKIMILTTFARAGYFERAVKAGVDAYLLKDSPSEELALSIRSVMS 118 +GLE A+ +++ CK+MI+TTFARA Y ++A+ V+ YLLKD P E L +I VM+ Sbjct: 61 TGLEVAKRIREQEWDCKMMIVTTFARASYLQQAMDLKVEGYLLKDEPIEFLVEAIHKVMN 120 Query: 119 GKRLYAPELMDEAYSGEANPLTQREKEVLGLIADGKNTKEIASQLYITTGTVRNYISVIL 178 G+R+ +P+L + E NPLT+RE+EVL L GK T++IA+ LY+T GTVRNYIS + Sbjct: 121 GERVLSPDLAMHLFLKEENPLTEREQEVLRLTKGGKTTEQIATVLYLTNGTVRNYISTAI 180 Query: 179 DKLDVGNRIEAITRFKEKGWF 199 KL+V NR +AI + +EKGW Sbjct: 181 QKLEVENRHQAIQKAEEKGWI 201 >SP2000 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 199 Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 89/200 (44%), Positives = 130/200 (65%), Gaps = 3/200 (1%) Query: 2 IKIVIAEDQRMXXXXXXXXXXXXXXMKVVGRAANGEEAVKLVQQHQPDICIMDIEMPAMS 61 +K+++AEDQ M ++ V +A NG+EA++L+++ DI I+D+EMP + Sbjct: 1 MKVLVAEDQSMLRDAMCQLLMLQPDVESVFQAKNGQEAIQLLEKESVDIAILDVEMPVKT 60 Query: 62 GLEAAEALKDSG--CKIMILTTFARAGYFERAVKAGVDAYLLKDSPSEELALSIRSVMSG 119 GLE E ++ K++++TTF R GYFERAVKAGVDAY+LK+ +L ++ +V+ G Sbjct: 61 GLEVLEWIRAEKLETKVVVVTTFKRPGYFERAVKAGVDAYVLKERNIADLMQTLHTVLEG 120 Query: 120 KRLYAPELMDEAYSGEANPLTQREKEVLGLIADGKNTKEIASQLYITTGTVRNYISVILD 179 ++ Y+PELM E NPLT++E VL IA G + +EIA +LY++ GTVRNY++ IL Sbjct: 121 RKEYSPELM-EVVMMHPNPLTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTNILS 179 Query: 180 KLDVGNRIEAITRFKEKGWF 199 KLD GNR EA KE GW Sbjct: 180 KLDAGNRTEAANIAKESGWL 199 >SA1159 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 200 Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 84/200 (42%), Positives = 126/200 (63%), Gaps = 3/200 (1%) Query: 1 MIKIVIAEDQRMXXXXXXXXXXXXXXMKVVGRAANGEEAVKLVQQHQPDICIMDIEMPAM 60 M ++IAEDQ M +++ NG +A+KL++++ P++ I+DIEMP M Sbjct: 1 MTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIEMPGM 60 Query: 61 SGLEAAEAL--KDSGCKIMILTTFARAGYFERAVKAGVDAYLLKDSPSEELALSIRSVMS 118 +GLE + K K++I+TTF R GYFE+AV VDAY+LK+ EEL +I V + Sbjct: 61 TGLEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNN 120 Query: 119 GKRLYAPELMDEAYSGEANPLTQREKEVLGLIADGKNTKEIASQLYITTGTVRNYISVIL 178 G++ Y+ LM ++ + NPLT +E+ VL I +G ++KEI+ +L++T GTVRNY SVI+ Sbjct: 121 GEKEYSATLM-TSFFVDKNPLTPKEQIVLREIGNGLSSKEISEKLFLTDGTVRNYTSVII 179 Query: 179 DKLDVGNRIEAITRFKEKGW 198 DKL NR +A + EKGW Sbjct: 180 DKLFADNRFDAWKKANEKGW 199 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.133 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 12,513,587 Number of extensions: 477826 Number of successful extensions: 2076 Number of sequences better than 1.0e-05: 215 Number of HSP's gapped: 1992 Number of HSP's successfully gapped: 215 Length of query: 200 Length of database: 38,378,431 Length adjustment: 101 Effective length of query: 99 Effective length of database: 26,729,697 Effective search space: 2646240003 Effective search space used: 2646240003 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 113 (48.1 bits)