BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0580.0027.p
         (109 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC0022 [E] COG0136 Aspartate-semialdehyde dehydrogenase              111   2e-25
CAC0568 [E] COG0136 Aspartate-semialdehyde dehydrogenase              110   7e-25
NMA0430 [L] COG1643 HrpA-like helicases                                56   1e-08
SSO2178 [E] COG0136 Aspartate-semialdehyde dehydrogenase               52   2e-07
SSO0874 [E] COG0136 Aspartate-semialdehyde dehydrogenase               50   1e-06

>CAC0022 [E] COG0136 Aspartate-semialdehyde dehydrogenase
          Length = 360

 Score =  111 bits (278), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/84 (58%), Positives = 65/84 (77%)

Query: 1   VTDEGIVKSEQPVITTQCIRVPVADGHMAAVFASFEQKPSKEEILERWNSFQGRPQALGL 60
           + +  IV +  P+ITTQCIRVPV DGH+AAVF +F+ KPSK+EI++ W +F+    AL L
Sbjct: 224 IENNKIVNASSPLITTQCIRVPVTDGHLAAVFVNFKTKPSKQEIIDAWENFKAPECALNL 283

Query: 61  PSAPKQFITYFAEENRPQTQLDRD 84
           PSAPK+F+ YF E +RPQT+LDRD
Sbjct: 284 PSAPKKFLHYFDEPDRPQTKLDRD 307


>CAC0568 [E] COG0136 Aspartate-semialdehyde dehydrogenase
          Length = 359

 Score =  110 bits (274), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 48/80 (60%), Positives = 66/80 (82%)

Query: 6   IVKSEQPVITTQCIRVPVADGHMAAVFASFEQKPSKEEILERWNSFQGRPQALGLPSAPK 65
           IV  + P+IT+QCIRV V+DGH+AA F SFE KP+KE+I+E+  +++G+PQ L LP+AP+
Sbjct: 230 IVSKKDPLITSQCIRVAVSDGHLAATFVSFENKPTKEQIVEKLKNYKGKPQLLNLPTAPE 289

Query: 66  QFITYFAEENRPQTQLDRDI 85
           QFITYF +E RPQ +LDR+I
Sbjct: 290 QFITYFEDEFRPQPKLDRNI 309


>NMA0430 [L] COG1643 HrpA-like helicases
          Length = 342

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 14  ITTQCIRVPVADGHMAAVFASFEQKPSKEEILERWNSFQGRPQALGLPSAPKQFITYFAE 73
           ++  C RVPV DGH  A++A    KP+ EE+ E +  F   P+   LPS P + +    E
Sbjct: 228 VSASCHRVPVVDGHTEAIWAGMRDKPTPEEVRESFLKFD--PKLGELPSEPGKALIVRDE 285

Query: 74  ENRPQTQLDRDI 85
            +RPQ +LDR++
Sbjct: 286 VDRPQPRLDRNM 297


>SSO2178 [E] COG0136 Aspartate-semialdehyde dehydrogenase
          Length = 356

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 37/64 (57%)

Query: 20  RVPVADGHMAAVFASFEQKPSKEEILERWNSFQGRPQALGLPSAPKQFITYFAEENRPQT 79
           RV    GH   ++ +F++  + E+I E  +SF+G PQ L LP+AP + I    ++ RPQ 
Sbjct: 237 RVATIHGHYEVIYITFKEDVTVEKIGETLDSFRGEPQNLKLPTAPDKPILLINQDARPQV 296

Query: 80  QLDR 83
             DR
Sbjct: 297 YFDR 300


>SSO0874 [E] COG0136 Aspartate-semialdehyde dehydrogenase
          Length = 350

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 40/80 (50%)

Query: 3   DEGIVKSEQPVITTQCIRVPVADGHMAAVFASFEQKPSKEEILERWNSFQGRPQALGLPS 62
           + G +KS    I     RVPV  GHM  +    +    ++E+ +  +SF   PQ   LP+
Sbjct: 220 EAGKLKSSSLEIHPTTTRVPVKVGHMGVINIVTDDNVDEKEVQKALDSFASLPQHKNLPT 279

Query: 63  APKQFITYFAEENRPQTQLD 82
           AP + I  F +E+RPQ   D
Sbjct: 280 APNKPIIVFKDEDRPQPARD 299


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.133    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 7,102,466
Number of extensions: 271248
Number of successful extensions: 1493
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1492
Number of HSP's successfully gapped: 5
Length of query: 109
Length of database: 38,378,431
Length adjustment: 77
Effective length of query: 32
Effective length of database: 29,497,713
Effective search space: 943926816
Effective search space used: 943926816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)