BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0014.p (350 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH2682 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transp... 269 4e-72 BMEI1737 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate tran... 157 3e-38 TM0484 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transp... 152 6e-37 CAC1400 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate trans... 139 7e-33 mll1755 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate trans... 102 1e-21 >BH2682 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Length = 330 Score = 269 bits (688), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 140/312 (44%), Positives = 207/312 (66%), Gaps = 1/312 (0%) Query: 40 APASSASAGNVDQPHKLTIMLDWYPNAVHSFLYAAQQKGYFEDEGLAVDIQMPADSNDAL 99 A + +A + + + +MLDWYPNAVH+FLY A + GYF +EGL VDI P + D + Sbjct: 17 ASCQTNTASDDEALETVEVMLDWYPNAVHTFLYVAIENGYFAEEGLDVDIVFPTNPTDPI 76 Query: 100 KLVAAGKVDLALSYQPQVLMARGEQIPVKSVAAIVRHPLNHLMVPADSGIKSPKELAGKN 159 +L A+G + LALSYQP V++AR + +PV SVA++VR PLNH+M A+ SP +L G Sbjct: 77 QLTASGAIPLALSYQPDVILARSKDLPVVSVASVVRSPLNHVMFLAEQDFDSPADLVGLT 136 Query: 160 AGYSSIPLYEAMLKTMVKSDGGDPSAVRLTDVGFDLIPAISAGRVDGIIGGFINHEQLIL 219 GY IP+ E +LKTMV++ GGD V L DVGF+L +I +GR D ++G +INHE +L Sbjct: 137 VGYPGIPVNEPILKTMVEAAGGDYEQVHLMDVGFELGASIVSGRADAVVGTYINHEYPVL 196 Query: 220 EKEGHPVISLNPTDYGVPDYYELVLVASDLGLQNAEGYIGKFMAAARKGQQFVAEHPQEA 279 + EGH + NP DYGVP+Y ELVL++++ ++ + + F AA KG +++ E+P EA Sbjct: 197 KHEGHDISYFNPVDYGVPEYDELVLISNEAYVEESGEVLAAFWRAALKGYEWMVENPDEA 256 Query: 280 LDLLMAHED-ATAPLDKDIETKSLKLLLPLMDAGDEPFGYQDPASWEKVKSWLNENGLLH 338 L++L+ ++D A PL +++E +SL +LL M+ + PFG QD SWE+V SWL+ + L Sbjct: 257 LNVLLTNQDEANFPLIQEVEEESLSILLEKMENPNGPFGGQDAESWEEVISWLDAHDWLE 316 Query: 339 GRVTTQDAFMNL 350 V +DAF ++ Sbjct: 317 QPVVAEDAFSSI 328 >BMEI1737 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Length = 341 Score = 157 bits (396), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 103/297 (34%), Positives = 155/297 (52%), Gaps = 12/297 (4%) Query: 42 ASSASAGNVDQPHKLTIMLDWYPNAVHSFLYAAQQKGYFEDEGLAVDIQMPADSNDALKL 101 ASSA A + KL ++LDWY N H + A + GYF GL VDI PAD++ K+ Sbjct: 36 ASSAEAND-----KLKLILDWYVNPDHGPIIIANKLGYFRQAGLDVDIVAPADASVPTKM 90 Query: 102 VAAGKVDLALSYQPQVLMARGEQIPVKSVAAIVRHPLNHLMVPADSGIKSPKELAGKNAG 161 VAAG+ DLA+SYQ QV + E +PV V ++ PLN LM D + + +L GK G Sbjct: 91 VAAGQADLAVSYQQQVHLQVHEGLPVIRVGTLIDSPLNCLMTRDDGSVNAIADLKGKKIG 150 Query: 162 YSSIPLYEAMLKTMVKSDGGDPSAVRLTDVGFDLIPAISAGRVDGIIGGFINHEQLILEK 221 YS + E +L T++ G S V L +V F L PA+ + +VD +IG + N E + Sbjct: 151 YSVAGVEETLLGTILGQHGVKLSDVELINVNFSLAPALMSKQVDAVIGAYRNVELNQMAV 210 Query: 222 EGHPVISLNPTDYGVPDYYELVLVASDLGLQNAEGY-IGKFMAAARKGQQFVAEHPQEAL 280 EG + GVP Y ELV VA+ L AE I +F+AA K Q++ HP+++ Sbjct: 211 EGVAGKCFFVEEEGVPVYDELVYVANSDKLDAAERQKISRFLAATEKAAQYIVNHPEKSY 270 Query: 281 DLLMAHEDATAPLDKDIETKSLKLLLPLMDAGDEPFGYQDPASWEKVKSWLNENGLL 337 ++ ++ + L ++ ++ K + D W + +S+L E+GL+ Sbjct: 271 EIFSSY---STELKDELNQRAWKDTVARFSRAPASL---DHGRWSRYESYLKEHGLV 321 >TM0484 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Length = 316 Score = 152 bits (385), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 98/298 (32%), Positives = 154/298 (51%), Gaps = 7/298 (2%) Query: 54 HKLTIMLDWYPNAVHSFLYAAQQKGYFEDEGLAVDIQMPADSNDALKLVAAGKVDLALSY 113 ++T++LDWYPN H+ LY A+ G++ +EGL V I P+ A +LVA+GK + +SY Sbjct: 20 EEVTVVLDWYPNTNHTGLYVAKDLGFYREEGLDVKIVQPSRLT-AEQLVASGKAEFGVSY 78 Query: 114 QPQVLMARGEQIPVKSVAAIVRHPLNHLMVPADSGIKSPKELAGKNAGYSSIPLYEAMLK 173 Q V ++RGE +P+ S+AAI++H + D GIKS K+ GK G P+ +A ++ Sbjct: 79 QEAVTLSRGEGMPIVSIAAIIQHNTSGFAWLKDEGIKSVKDWEGKRYGSWGSPIEKATIE 138 Query: 174 TMVKSDGGDPSAVRLTDVGFDLIPAISAGRVDGIIGGFINHEQLILEKEGHPVISLNPTD 233 +++ G DPS V +VG A + V F + + + +G + L D Sbjct: 139 YIMRKYGADPSKVIFVNVGQMDFFAGTLNDVFDFAWIFYGWDGVASKVKGIEIEFLPLKD 198 Query: 234 YG-VPDYYELVLVASDLGLQNAEGYIGKFMAAARKGQQFVAEHPQEALDLLMAHEDATAP 292 V DYY VL+ S+ ++ + +F+ A KG ++ +HP EA +L+ + AP Sbjct: 199 IDEVFDYYTPVLITSESLMKQKPDLVRRFLRATAKGYEYAIQHPVEAAKILLKY----AP 254 Query: 293 -LDKDIETKSLKLLLPLMDAGDEPFGYQDPASWEKVKSWLNENGLLHGRVTTQDAFMN 349 LD+ I +S K L A E +GYQ W + WL+ G L + AF N Sbjct: 255 ELDEKIVVESQKYLAGQYKADAEKWGYQKEEVWRRYAEWLHSMGFLKEMIDVTKAFTN 312 >CAC1400 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Length = 333 Score = 139 bits (350), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 99/345 (28%), Positives = 169/345 (48%), Gaps = 25/345 (7%) Query: 12 KRKRPXXXXXXXXXXXXXVSGCGGDNHAAPASSASAGNVDQPHKLTIMLDWYPNAVHSFL 71 K+K+ ++GC + S+S+ +D K T++LDW PN H+ + Sbjct: 2 KKKKILSLISAVIMTSAIITGCTSN------GSSSSNKLD---KTTVILDWTPNTNHTGM 52 Query: 72 YAAQQKGYFEDEGLAVDIQMPADSNDALKLVAAGKVDLALSYQPQVLMARGEQ--IPVKS 129 Y A KGY+++EGL V IQ P+ S L+A K D +SYQ V A + +P+K+ Sbjct: 53 YVALDKGYYKEEGLDVKIQQPS-SGSVTDLIATNKGDFGVSYQEDVTYALTGKTPLPIKT 111 Query: 130 VAAIVRHPLNHLMVPADSGIKSPKELAGKNAGYSSIPLYEAMLKTMVKSDGGDPSAVRLT 189 +AA+++H + P IKS K+ GK G P EA++K +++ +G D S +++ Sbjct: 112 IAAVLQHNTSGFAAPKSKNIKSIKDAEGKVYGGWGSPSEEAVIKAIMEKNGADFSKLKIV 171 Query: 190 DVGFDLIPAISAGRVD--GIIGGFINHEQLI--LEKEGHPVISLNPTDYGVPDYYELVLV 245 ++G D A + VD I G+ E + ++ + V L+P DYY V++ Sbjct: 172 NIGNDDYFAATKKNVDFAWIFEGWTGIEAKLKGIDLDYVAVKDLDP----ALDYYTPVII 227 Query: 246 ASDLGLQNAEGYIGKFMAAARKGQQFVAEHPQEALDLLMAHEDATAP-LDKDIETKSLKL 304 ++ L+ KFM A +KG Q+ A+HP+E+ +L + AP +D+ + +S K Sbjct: 228 TNNKILKENPAKAKKFMLATKKGYQYAAKHPEESAKILRKY----APEIDEKLAVESQKY 283 Query: 305 LLPLMDAGDEPFGYQDPASWEKVKSWLNENGLLHGRVTTQDAFMN 349 + +G + W+ +L GL+ + +DAF N Sbjct: 284 MATHYADDMSKWGEMKSSVWKNYADFLKSKGLIKKELNVKDAFTN 328 >mll1755 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Length = 338 Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 88/296 (29%), Positives = 142/296 (47%), Gaps = 10/296 (3%) Query: 55 KLTIMLDWYPNAVHSFLYAAQQKGYFEDEGLAVDIQMPADSNDALKLVAAGKVDLALSYQ 114 K+T+ LDW N H L+ A+ KG++ + GL VDI +P A LVA D ++ Sbjct: 33 KVTVALDWTVNTNHIGLFVARDKGFYREAGLEVDI-LPYSDTGAGTLVANRVADFGINGT 91 Query: 115 PQVLMARGEQIPVKSVAAIVRHPLNHLMVPADSG-IKSPKELAGKNAGYSSIPLYEAMLK 173 + + +K+V A+V+ ++ A+ G IKSPK+L G G A++ Sbjct: 92 ISLFTQKTAGADLKAVYAVVQSETGRVVFNAERGEIKSPKDLDGLTYGGFGSAWENALIS 151 Query: 174 TMVKSDGGDPSAVRLTDVGFDLIPAISAGRVDGIIGGFINHEQLILEKEGHPVISLNPTD 233 T+++ DGG + +T +G A++ G VD + E + E +G S D Sbjct: 152 TIIRHDGGKGNFETVT-LGTSAYEALANGSVDFTLE-VSTWEGVEAELKGIKQRSFVYAD 209 Query: 234 YGVPDYYELVLVASDLGLQNAEGYIGKFMAAARKGQQFVAEHPQEALDLLMAHEDATAPL 293 YGVPD + ++ +S+ LQ F+ A R+G QF +HP EA L+ + A Sbjct: 210 YGVPDEHTTLISSSEAYLQANPALASAFIQATRRGYQFTVDHPAEAA-ALLIAANKDALT 268 Query: 294 DKDIETKSLKLLLP--LMDAGDEPFGYQDPASWEKVKSWLNENGLLH---GRVTTQ 344 + + SLK L+ + A + G DPA E + +L + G+L G++ TQ Sbjct: 269 NPALIEASLKALIDGHYLRAENGAIGTMDPAKMEAIGDFLFKAGILRDADGKILTQ 324 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.316 0.134 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 26,877,209 Number of extensions: 1199522 Number of successful extensions: 2532 Number of sequences better than 1.0e-05: 17 Number of HSP's gapped: 2518 Number of HSP's successfully gapped: 17 Length of query: 350 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 243 Effective length of database: 26,037,693 Effective search space: 6327159399 Effective search space used: 6327159399 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 116 (49.3 bits)