BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0012.p (257 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC1401 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate trans... 205 7e-53 TM0483 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transp... 176 3e-44 STM0483 [F] COG0503 Adenine/guanine phosphoribosyltransferases a... 176 3e-44 RSc1199 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate trans... 173 2e-43 BH2680 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transp... 166 3e-41 >CAC1401 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Length = 252 Score = 205 bits (521), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 104/229 (45%), Positives = 150/229 (65%), Gaps = 23/229 (10%) Query: 1 MISMTDLSYSFGTSPETPVFSGLSMDVRQGEFISLVGASGCGKSTLFKIIAGLLQQTGGE 60 +I + +++ SF E V +S++V+ GEF+S++G SGCGKSTLF II L GE Sbjct: 19 VIDIKNVTKSF---DEETVLKDVSLNVKSGEFVSILGPSGCGKSTLFNIITALTDADSGE 75 Query: 61 LNIPGTISADPSSRLGRVAYMPQQDLLLPWRTVLDNCLLPWEL---NRTGSKTEAVRSIR 117 + + G I YM Q+DLLLPW+TV+DN +LP +L N+ S++EA + I Sbjct: 76 VKVSGDI-----------GYMQQKDLLLPWKTVIDNVVLPLDLKGKNKKESRSEAKKYIE 124 Query: 118 NMLERFGLAGTEQRYPHELSGGMRQRTAMLRTLAAGHKLMLLDEPFGALDAITKRGLHRW 177 M GL G E +YP+ELSGGM+QR + LRT + ++MLLDEPFGALD+ITK + +W Sbjct: 125 IM----GLKGYENKYPYELSGGMKQRASFLRTFLSSSEIMLLDEPFGALDSITKGNMQKW 180 Query: 178 LLELXXXXSLEQTVLFITHDLEEALLLSDRIYLMSGGAGGGVQEFPVDL 226 +L++ L++T+LFITHD+EEA+LLSDRIY++ G +EF ++ Sbjct: 181 ILQMKDV--LKRTILFITHDIEEAILLSDRIYVLGSRPGVVKKEFNIEF 227 >TM0483 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Length = 235 Score = 176 bits (446), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 100/257 (38%), Positives = 158/257 (61%), Gaps = 24/257 (9%) Query: 1 MISMTDLSYSFGTSPETPVFSGLSMDVRQGEFISLVGASGCGKSTLFKIIAGLLQQTGGE 60 MI ++ L+ +G E LS++V++GE +SLVG SGCGK+T+ K I GL+ G + Sbjct: 1 MIKVSQLTVRYG---ELKAVEDLSLEVQRGEILSLVGPSGCGKTTVVKAILGLIPYEG-K 56 Query: 61 LNIPGTISADPSSRLGRVAYMPQQDLLLPWRTVLDNCLLPWELNRTGSKTEAVRSIRNML 120 + I +SRLG Y PQ+D+L W TV +N +LP L K + +I+ + Sbjct: 57 IEIF-------TSRLG---YCPQKDVLFDWMTVYENAVLPLVLR----KEQPPSNIKELF 102 Query: 121 ERFGLAGTEQRYPHELSGGMRQRTAMLRTLAAGHKLMLLDEPFGALDAITKRGLHRWLLE 180 ERFGL+G E++ P++LSGGMRQ+ ++LR + +G +L++LDEPF ++DA T++ L WL E Sbjct: 103 ERFGLSGFEEKRPYQLSGGMRQKLSLLRAVLSGEELLVLDEPFSSVDAYTRKKLQIWLSE 162 Query: 181 LXXXXSLEQTVLFITHDLEEALLLSDRIYLMSGGAGGGVQEFPVDLPRPRHYRLNYDPHF 240 + ++ TV+ ITHD+EEA+ LSDRI ++S ++E V +PR + DP F Sbjct: 163 I--VHRMKSTVVLITHDVEEAVFLSDRILILSDRPARILKEIRVPFSKPRTIKTFSDPRF 220 Query: 241 VALRADLERRLYETYIS 257 +++E + ET ++ Sbjct: 221 ----SEIEEEVLETLMN 233 >STM0483 [F] COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Length = 183 Score = 176 bits (446), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 0/257 (0%), Positives = 0/257 (0%), Gaps = 24/257 (9%) Query: 1 MISMTDLSYSFGTSPETPVFSGLSMDVRQGEFISLVGASGCGKSTLFKIIAGLLQQTGGE 60 M + + L + + Sbjct: 1 MTATAQQLEFLK---NSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIELLVERYKNA-G 56 Query: 61 LNIPGTISADPSSRLGRVAYMPQQDLLLPWRTVLDNCLLPWELNRTGSKTEAVRSIRNML 120 + + + + + L Sbjct: 57 ITKV-------VGTEA---RGFLFGAPVALGLGVGFVPVRKPRK----LPRETIAETYEL 102 Query: 121 ERFGLAGTEQRYPHELSGGMRQRTAMLRTLAAGHKLMLLDEPFGALDAITKRGLHRWLLE 180 E + + +L T + L G ++ + L Sbjct: 103 EYGTDQLEIHVDAIKPGDNVLVVDDLLATGGTIEATVKLIRRLGGKVTDAAFIINLFDLG 162 Query: 181 LXXXXSLEQTVLFITHDLEEALLLSDRIYLMSGGAGGGVQEFPVDLPRPRHYRLNYDPHF 240 Sbjct: 163 G-- 220 Query: 241 VALRADLERRLYETYIS 257 Sbjct: 221 ---- 233 >RSc1199 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Length = 270 Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 100/224 (44%), Positives = 140/224 (62%), Gaps = 8/224 (3%) Query: 24 SMDVRQGEFISLVGASGCGKSTLFKIIAGLLQQTGGELNIPGTISADPSSRLGRVAYMPQ 83 S+DV+ GEF+S+VG +GCGKSTL + AGLLQ + G++ + G A + R G YM Q Sbjct: 32 SLDVQAGEFVSVVGPTGCGKSTLLNLAAGLLQPSSGQVRVFGEPLAGINRRAG---YMFQ 88 Query: 84 QDLLLPWRTVLDNCLLPWELNRTGSKTEAVRSIRNMLERFGLAGTEQRYPHELSGGMRQR 143 + L+PWR+ L N L E R EA R+ L R GLAG E RYPH+LSGGMR+R Sbjct: 89 AEALMPWRSALGNVLAGLEF-RGMPAAEAQDLARSWLARVGLAGFEDRYPHQLSGGMRKR 147 Query: 144 TAMLRTLAAGHKLMLLDEPFGALDAITKRGLHRWLLELXXXXSLEQTVLFITHDLEEALL 203 ++ +TL ++L+DEPF ALD T++ + +L+L + + VLFITHDL+EA+ Sbjct: 148 VSLAQTLVLDPDIILMDEPFSALDIQTRQLMENEVLDL--WAAKRKAVLFITHDLDEAIA 205 Query: 204 LSDRIYLMSGGAGG-GVQEFPVDLPRPRHY-RLNYDPHFVALRA 245 +SDR+ +++ G G + EF +DLPRPR + D FV L A Sbjct: 206 MSDRVVVLAAGPGTRPIGEFAIDLPRPRDVAEIRDDAGFVDLHA 249 >BH2680 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Length = 249 Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 102/246 (41%), Positives = 137/246 (55%), Gaps = 14/246 (5%) Query: 10 SFGTSPETPVFSGLSMDVRQGEFISLVGASGCGKSTLFKIIAGLLQQTGGELNIPGTISA 69 SF S +PV LS V + E ++++ SG GKSTLF++I L E GTI Sbjct: 12 SFAYSSSSPVIERLSFTVFENEIVAILAKSGSGKSTLFRLITRL------ESPDQGTIVC 65 Query: 70 DPSSRLGRVAYMPQQDLLLPWRTVLDNCLLPWELNRTGSKTEAVRSIRNMLERFGLAGTE 129 G++ YMPQQDLLLPW T+L+N LP E+ + K EA + RFGL GTE Sbjct: 66 HAQ---GKIGYMPQQDLLLPWLTILENVSLPLEI-QGKDKKEAKIIAASFFNRFGLVGTE 121 Query: 130 QRYPHELSGGMRQRTAMLRTLAAGHKLMLLDEPFGALDAITKRGLHRWLLELXXXXSLEQ 189 YP LSGGMRQR A LR L+LLDEPF +LD++TK +H WL+ + ++ Sbjct: 122 SLYPDALSGGMRQRAAFLRATLTSETLLLLDEPFASLDSLTKTSMHHWLVSMWEKE--KR 179 Query: 190 TVLFITHDLEEALLLSDRIYLMSGGAGGGVQE--FPVDLPRPRHYRLNYDPHFVALRADL 247 T+L +THD+EEALLLSDR+++ + G E P DL R + +L+ D+ Sbjct: 180 TLLLVTHDIEEALLLSDRLFIFTNQPLHGFTEVQVPPDLRRKMETTEKMEQQRSSLKKDI 239 Query: 248 ERRLYE 253 L E Sbjct: 240 RALLIE 245 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.139 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,143,460 Number of extensions: 803091 Number of successful extensions: 18140 Number of sequences better than 1.0e-05: 2062 Number of HSP's gapped: 15003 Number of HSP's successfully gapped: 2249 Length of query: 257 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 153 Effective length of database: 26,383,695 Effective search space: 4036705335 Effective search space used: 4036705335 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 114 (48.5 bits)