BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0011.p (217 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SA2364 [K] COG1309 Transcriptional regulator 73 3e-13 aq_2179 [K] COG1309 Transcriptional regulator 54 2e-07 MTH1787 [K] COG1309 Transcriptional regulator 53 4e-07 ZuidR [K] COG1309 Transcriptional regulator 50 2e-06 uidR [K] COG1309 Transcriptional regulator 50 2e-06 >SA2364 [K] COG1309 Transcriptional regulator Length = 185 Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 94/186 (50%), Gaps = 12/186 (6%) Query: 31 QRILEAAEALFEENGLEPVSMYGIAKRAGIGQGSLYRRFTDKGEICSALLSTSSERFLSR 90 QRI E A LF+E G+E +SM IAK GIG G+LYR F DK ++C ++ + F++ Sbjct: 10 QRIEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCYYVIQRDLDIFITH 69 Query: 91 LEQELQATTGASNSLEDLQSSIEQVVDFIDQHAELLQMIKSEFTGKKQLTQFEHPIFRRL 150 + Q ++ E +Q S++ ++ F + LLQ I++ G +L ++ ++ L Sbjct: 70 FK---QIKDDYHSNYEVMQVSLDYLLQFKIDNKALLQCIEA---GNNKLRFYQSAFYQEL 123 Query: 151 NEVMTQRLRRAADDGLLIAVDPQFAATALIAVLSPDLYLYQQKLHNSTKEEISRGVLALF 210 + L ++ DD +F L+ LS ++ +Q + + + E +L ++ Sbjct: 124 FDFYYD-LFKSDDDTY-----TKFKTDMLLQSLSTSVFAFQIEHRHISIEAYRNYLLNIY 177 Query: 211 VTGIQR 216 + ++R Sbjct: 178 LDEVER 183 >aq_2179 [K] COG1309 Transcriptional regulator Length = 666 Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 8/88 (9%), Positives = 15/88 (17%), Gaps = 3/88 (3%) Query: 31 QRILEAAEALFEENGLEPVSMYGIAKRAGIGQGSLYRRFTDKGEICSALLSTSSERFLSR 90 + E+ + E S S Sbjct: 16 YINEKGKVKGDFEHPANLGDICKKPLYLPKVLNRGRIAKPMYRENKSHSFREISWEEAYE 75 Query: 91 LEQELQATTGASNSLEDLQSSIEQVVDF 118 + +E S E Q++ Sbjct: 76 ILKEKLI--SFSPD-ETYFYLSGQLLTE 100 >MTH1787 [K] COG1309 Transcriptional regulator Length = 268 Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 11/159 (6%), Positives = 30/159 (18%), Gaps = 10/159 (6%) Query: 31 QRILEAAEALFEENGLEPVSMYGIAKRAGIGQGSLYRRFTDKGEICSALLSTSSERFLSR 90 + ++ + + KR I +I + + + R Sbjct: 16 AETGDLKIKTYKVVLIARAASIFGVKRIVIYHDDADGEARFIRDILTYMDTPQYL----R 71 Query: 91 LEQELQATTGASNSLEDLQSSIEQVVD-FIDQHAELL--QMIKSEFTGKKQLTQFEHP-- 145 + + + + + T + + Sbjct: 72 RKVFPIMRELKHVGILPPLRTPHHPTGKPVTGEYRQGLTVKRVKKGT-LVDIGADKLALC 130 Query: 146 IFRRLNEVMTQRLRRAADDGLLIAVDPQFAATALIAVLS 184 + + +LI D VL Sbjct: 131 REKLTVNRIMSFRVVRLGKEILIEPDEPEDRYWGYEVLD 169 >ZuidR [K] COG1309 Transcriptional regulator Length = 196 Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 4/138 (2%) Query: 28 PYIQRILEAAEALFEENGLEPVSMYGIAKRAGIGQGSLYRRFTDKGEICSALLSTSSERF 87 P RIL AA +F ENG SM I K I G+LY F K + A++ ER Sbjct: 11 PTRTRILNAAREIFSENGFHSASMKAICKSCAISPGTLYHHFISKEALIQAIILQDQERA 70 Query: 88 LSRLEQELQATTGASNSLEDLQSSIEQVVDFIDQHAELLQMIKSEFTGKKQLTQFEHPIF 147 L+R + ++ +E + S + Q A +++ I +E Q+ Sbjct: 71 LARFREPIEGIHFVDYMVESIVSLTHEA---FGQRALVVE-IMAEGMRNPQVAAMLKNKH 126 Query: 148 RRLNEVMTQRLRRAADDG 165 + E + QR+R A G Sbjct: 127 MTITEFVAQRMRDAQQKG 144 >uidR [K] COG1309 Transcriptional regulator Length = 196 Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 4/138 (2%) Query: 28 PYIQRILEAAEALFEENGLEPVSMYGIAKRAGIGQGSLYRRFTDKGEICSALLSTSSERF 87 P RIL AA +F ENG SM I K I G+LY F K + A++ ER Sbjct: 11 PTRTRILNAAREIFSENGFHSASMKAICKSCAISPGTLYHHFISKEALIQAIILQDQERA 70 Query: 88 LSRLEQELQATTGASNSLEDLQSSIEQVVDFIDQHAELLQMIKSEFTGKKQLTQFEHPIF 147 L+R + ++ +E + S + Q A +++ I +E Q+ Sbjct: 71 LARFREPIEGIHFVDYMVESIVSLTHEA---FGQRALVVE-IMAEGMRNPQVAAMLKNKH 126 Query: 148 RRLNEVMTQRLRRAADDG 165 + E + QR+R A G Sbjct: 127 MTITEFVAQRMRDAQQKG 144 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.316 0.132 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 14,378,839 Number of extensions: 499243 Number of successful extensions: 3100 Number of sequences better than 1.0e-05: 13 Number of HSP's gapped: 3109 Number of HSP's successfully gapped: 13 Length of query: 217 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 115 Effective length of database: 26,614,363 Effective search space: 3060651745 Effective search space used: 3060651745 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 113 (48.1 bits)