BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0008.p (283 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC3325 [ET] COG0834 ABC-type amino acid transport/signal transd... 325 5e-89 mll3861 [ET] COG0834 ABC-type amino acid transport/signal transd... 275 7e-74 BH0170 [ET] COG0834 ABC-type amino acid transport/signal transdu... 262 5e-70 SA2202 [ET] COG0834 ABC-type amino acid transport/signal transdu... 229 3e-60 HI1080 [ET] COG0834 ABC-type amino acid transport/signal transdu... 212 4e-55 >CAC3325 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 269 Score = 325 bits (833), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 159/236 (67%), Positives = 188/236 (79%), Gaps = 2/236 (0%) Query: 50 QNSLEAIKASGKLRIGTEGTYAPFTFHDASGKLTGFDVEIAEEVAKRLGVKPEFFETQWD 109 QNSLE IK+ GKLRIGTEGTYAPFTFHD+ G LTGFDV+IA+EV+KR+GVKPEF ET+WD Sbjct: 34 QNSLEKIKSEGKLRIGTEGTYAPFTFHDSKGNLTGFDVDIAKEVSKRIGVKPEFVETKWD 93 Query: 110 GIFAGMDAKRFDVIFNEVSITDERKVKYDFSDPYIVSKAVLIVGEKNEDIKTFADLKGKK 169 G+FAG+DA RFDV+ NEV+I +RKVKYDFS PYI S+AVLIV + N IK+F+DLKGKK Sbjct: 94 GMFAGLDAGRFDVVLNEVAIKPDRKVKYDFSTPYITSRAVLIVKKDNNTIKSFSDLKGKK 153 Query: 170 AGQSLTSNLSDIARENGAEIVVTDGFNQAIDLLTSGRIDATVNDGLSYLDLKKQKPDVKI 229 + QSLTSNL +IA+ NGAE++ DGFN+A+DLLTS R+DAT+ND LSYLDLKKQKPD I Sbjct: 154 SAQSLTSNLGNIAKNNGAELIQVDGFNEAVDLLTSNRVDATINDSLSYLDLKKQKPDAPI 213 Query: 230 KVVDEIAEGSQSAAVFLKG--NDXXXXXXXXXXXXMKSDGTYLKISEKYFGADVSK 283 K V S+SAA+F KG N MKSDGTYLKIS+K+FG DVSK Sbjct: 214 KSVANYNNASESAAMFKKGSNNKELIAAVNKALKDMKSDGTYLKISKKWFGTDVSK 269 >mll3861 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 267 Score = 275 bits (703), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 134/232 (57%), Positives = 167/232 (71%) Query: 52 SLEAIKASGKLRIGTEGTYAPFTFHDASGKLTGFDVEIAEEVAKRLGVKPEFFETQWDGI 111 +L+ IK +G +++GTEGTYAPFT+HDASG L GFDVEIA+ +A +LGVK EF E +WDG+ Sbjct: 36 NLDQIKQAGVIKVGTEGTYAPFTYHDASGALVGFDVEIAKAIADKLGVKVEFLEGKWDGL 95 Query: 112 FAGMDAKRFDVIFNEVSITDERKVKYDFSDPYIVSKAVLIVGEKNEDIKTFADLKGKKAG 171 AG+D KR+D + NEV ITD RK KYDFSDPYI SKAVLIV N DIKTFADLKGKK+ Sbjct: 96 IAGLDVKRYDAVINEVGITDARKAKYDFSDPYIASKAVLIVRGDNTDIKTFADLKGKKSA 155 Query: 172 QSLTSNLSDIARENGAEIVVTDGFNQAIDLLTSGRIDATVNDGLSYLDLKKQKPDVKIKV 231 QSLTSN +A +GAE+V TDGF+Q+I LL +GR DAT+ND LS+LD KK KPD +K+ Sbjct: 156 QSLTSNFGKLAEASGAELVGTDGFDQSIQLLLTGRADATINDSLSFLDFKKHKPDANVKI 215 Query: 232 VDEIAEGSQSAAVFLKGNDXXXXXXXXXXXXMKSDGTYLKISEKYFGADVSK 283 + S + KG+ +K+DGTY KI++ YFG DVSK Sbjct: 216 AAQEENADYSGVIVRKGDAELVAAINKALADIKADGTYKKIADTYFGQDVSK 267 >BH0170 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 275 Score = 262 bits (669), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 128/229 (55%), Positives = 164/229 (71%) Query: 53 LEAIKASGKLRIGTEGTYAPFTFHDASGKLTGFDVEIAEEVAKRLGVKPEFFETQWDGIF 112 L ++A GKL IGTEGTY PFTFHD SG+LTGFDVE+A EVA RLGV+ +F ETQWD +F Sbjct: 45 LAKVQAEGKLLIGTEGTYPPFTFHDESGELTGFDVELAREVADRLGVEADFMETQWDAMF 104 Query: 113 AGMDAKRFDVIFNEVSITDERKVKYDFSDPYIVSKAVLIVGEKNEDIKTFADLKGKKAGQ 172 AG+DA+RFD+I N+V I ++R KYDFSD YI S AV++ E N++I +F D++GKK+ Q Sbjct: 105 AGLDAERFDMIANQVGIREDRLEKYDFSDHYITSTAVVVTHEDNDEINSFEDIEGKKSAQ 164 Query: 173 SLTSNLSDIARENGAEIVVTDGFNQAIDLLTSGRIDATVNDGLSYLDLKKQKPDVKIKVV 232 SLTSN +D+ARE AEIV DGFNQAI+LL S R+D T+ND LS LD +P+ IK+V Sbjct: 165 SLTSNYADLAREYNAEIVGVDGFNQAIELLNSKRVDVTINDNLSVLDFLNNRPNAPIKMV 224 Query: 233 DEIAEGSQSAAVFLKGNDXXXXXXXXXXXXMKSDGTYLKISEKYFGADV 281 E + +QS +F KGN+ + DGTY IS+K+FG DV Sbjct: 225 AEHEDAAQSGFMFRKGNEELVEAVNEALAEIIEDGTYEDISKKWFGEDV 273 >SA2202 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 259 Score = 229 bits (585), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 119/231 (51%), Positives = 155/231 (67%), Gaps = 1/231 (0%) Query: 54 EAIKASGKLRIGTEGTYAPFTFHDASGKLTGFDVEIAEEVAKRLGVKPEFFETQWDGIFA 113 EA K S + +GTEGTYAPF+FHD GKLTG+D+++ + VAK G+K +F ET WD +FA Sbjct: 27 EANKDSKTINVGTEGTYAPFSFHDKDGKLTGYDIDVIKAVAKEEGLKLKFNETSWDSMFA 86 Query: 114 GMDAKRFDVIFNEVSITDERKVKYDFSDPYIVSKAVLIVGEKNEDIKTFADLKGKKAGQS 173 G+DA RFDVI N+V I +R+ KY FS PY S AVL++ E +DIK F D+KGKK Q+ Sbjct: 87 GLDAGRFDVIANQVGINPDREKKYKFSKPYTFSSAVLVIRENEKDIKDFDDVKGKKLAQT 146 Query: 174 LTSNLSDIARENGAEIVVTDGFNQAIDLLTSGRIDATVNDGLSYLDLKKQKPDVKIKVVD 233 TSN +A++ GA+I DGFNQ++DLL S R+D T ND LSYLD KKQKP+ KIK + Sbjct: 147 FTSNYGKLAKDKGADITKVDGFNQSMDLLLSKRVDGTFNDSLSYLDYKKQKPNAKIKAIK 206 Query: 234 EIAEGSQSAAVFL-KGNDXXXXXXXXXXXXMKSDGTYLKISEKYFGADVSK 283 AE S+SA F K +D ++ +G KI +K+FG DVSK Sbjct: 207 GNAEQSRSAFAFSKKADDETVQKFNDGLKKIEENGELAKIGKKWFGQDVSK 257 >HI1080 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 257 Score = 212 bits (540), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 103/222 (46%), Positives = 149/222 (67%) Query: 62 LRIGTEGTYAPFTFHDASGKLTGFDVEIAEEVAKRLGVKPEFFETQWDGIFAGMDAKRFD 121 L +GTEGTYAPFTFHD SGKLTGFDVE+ +VA++LG+K EF ETQWD ++AG++AKRFD Sbjct: 36 LLVGTEGTYAPFTFHDKSGKLTGFDVEVIRKVAEKLGLKVEFKETQWDAMYAGLNAKRFD 95 Query: 122 VIFNEVSITDERKVKYDFSDPYIVSKAVLIVGEKNEDIKTFADLKGKKAGQSLTSNLSDI 181 VI N+ + + ER KY F+ PY S V++ + IK+F DLKG+K+ QS TSN Sbjct: 96 VIANQTNPSPERLKKYSFTTPYNYSGGVIVTKSSDNSIKSFEDLKGRKSAQSATSNWGKD 155 Query: 182 ARENGAEIVVTDGFNQAIDLLTSGRIDATVNDGLSYLDLKKQKPDVKIKVVDEIAEGSQS 241 A+ GA+I+V DG Q+++L+ GR +AT+ND L+ LD KQ P+ +K+ + + + + Sbjct: 156 AKAAGAQILVVDGLAQSLELIKQGRAEATINDKLAVLDYFKQHPNSGLKIAYDRGDKTPT 215 Query: 242 AAVFLKGNDXXXXXXXXXXXXMKSDGTYLKISEKYFGADVSK 283 A FL+G D ++ DGT +IS ++FG D+++ Sbjct: 216 AFAFLQGEDALITKFNQVLEALRQDGTLKQISIEWFGYDITQ 257 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.314 0.134 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,379,243 Number of extensions: 669392 Number of successful extensions: 2320 Number of sequences better than 1.0e-05: 142 Number of HSP's gapped: 2151 Number of HSP's successfully gapped: 145 Length of query: 283 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 178 Effective length of database: 26,268,361 Effective search space: 4675768258 Effective search space used: 4675768258 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 115 (48.9 bits)