BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0007.p (222 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC3326 [E] COG0765 ABC-type amino acid transport system, permea... 283 1e-76 BH0171 [E] COG0765 ABC-type amino acid transport system, permeas... 269 2e-72 mll3859 [E] COG0765 ABC-type amino acid transport system, permea... 269 3e-72 BMEII0600 [E] COG0765 ABC-type amino acid transport system, perm... 248 5e-66 NMA0999 [E] COG0765 ABC-type amino acid transport system, permea... 242 3e-64 >CAC3326 [E] COG0765 ABC-type amino acid transport system, permease component Length = 227 Score = 283 bits (725), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 153/219 (69%), Positives = 182/219 (83%) Query: 4 RKIQIFLDSLLPLLKAGVAFTIPLAVVSFILGLLLAIFTALIRLSPWTLPRLIARFYVWI 63 R I+I DS LPLL AG+ FT+PL ++SFILGLLLA+ TAL R+S L+ARFYV I Sbjct: 9 RIIKILEDSFLPLLTAGLKFTVPLTLISFILGLLLALVTALARISNIKPLELLARFYVSI 68 Query: 64 IRGTPLLVQLFIIFFGLPAVGIILDPFIAATIGFTLSVGAYSSEIVRAAILSIHKGQWEA 123 IRGTPLLVQLFIIFFGLP VG+ + P AA IGFTLSVGAY+SE++RAAILSI KGQWEA Sbjct: 69 IRGTPLLVQLFIIFFGLPTVGVTIKPLTAAIIGFTLSVGAYNSEVIRAAILSIPKGQWEA 128 Query: 124 AFSVGMTRGQALRRVILPQAARVSVPPLSNSFISLVKDTSLAATITYVEIFKTAQQITAT 183 A S+GMT Q+L RV+LPQAARVSVPPL+NSFISLVKDTSLAATIT E+F+ AQ+ITAT Sbjct: 129 ASSIGMTYTQSLVRVVLPQAARVSVPPLANSFISLVKDTSLAATITVAEMFQVAQRITAT 188 Query: 184 TYEPLLLYCEAALFYLLFCSVLSVLQNYLEKRLDRYSAR 222 TYEPL +Y EAA Y +FCS+L+++Q+YLEK+L RY+ R Sbjct: 189 TYEPLWMYIEAAFIYYIFCSLLTLIQHYLEKKLARYTTR 227 >BH0171 [E] COG0765 ABC-type amino acid transport system, permease component Length = 233 Score = 269 bits (688), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 135/220 (61%), Positives = 174/220 (79%) Query: 3 DRKIQIFLDSLLPLLKAGVAFTIPLAVVSFILGLLLAIFTALIRLSPWTLPRLIARFYVW 62 +R I I SLLPLLK + +TIPL ++SF +GL +A+ TAL R+S +++AR YV Sbjct: 14 ERWITIAQSSLLPLLKGALYYTIPLTLISFTIGLFIAVLTALARISGVAPLKMVARVYVS 73 Query: 63 IIRGTPLLVQLFIIFFGLPAVGIILDPFIAATIGFTLSVGAYSSEIVRAAILSIHKGQWE 122 IIRGTPLLVQLFIIF+GLP++G+ +DPF AA IGF+L+VGAY+SEI+RAAILSI KGQWE Sbjct: 74 IIRGTPLLVQLFIIFYGLPSIGVTIDPFPAAVIGFSLNVGAYASEIIRAAILSIPKGQWE 133 Query: 123 AAFSVGMTRGQALRRVILPQAARVSVPPLSNSFISLVKDTSLAATITYVEIFKTAQQITA 182 AA+S+GM+ QAL+R++LPQA+RVS+PPLSNSFISLVKDTSLA+ I E+F+ AQ+I A Sbjct: 134 AAYSIGMSYPQALKRIVLPQASRVSIPPLSNSFISLVKDTSLASLILVAEMFRRAQEIAA 193 Query: 183 TTYEPLLLYCEAALFYLLFCSVLSVLQNYLEKRLDRYSAR 222 T YE LLLY +A Y + C LS++Q +E RLDRY A+ Sbjct: 194 TNYEFLLLYAQAGAIYWIICFGLSLVQGRIENRLDRYVAK 233 >mll3859 [E] COG0765 ABC-type amino acid transport system, permease component Length = 226 Score = 269 bits (687), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 141/217 (64%), Positives = 172/217 (79%), Gaps = 2/217 (0%) Query: 6 IQIFLDSLLPLLKAGVAFTIPLAVVSFILGLLLAIFTALIRL-SPWTLPRLIARFYVWII 64 +Q+ L+SL LL A + FT+PL + SF+LGL + + AL RL P L L+ RFYVWI Sbjct: 5 LQLMLESLPSLLWAALIFTVPLTLSSFVLGLTVGLGAALGRLFGPKPLVMLV-RFYVWIF 63 Query: 65 RGTPLLVQLFIIFFGLPAVGIILDPFIAATIGFTLSVGAYSSEIVRAAILSIHKGQWEAA 124 RGTPLLVQLF+IF+GLP+VGI+LD F AA IGFTL++GAY+SEI+RAAI S+ KGQWEAA Sbjct: 64 RGTPLLVQLFLIFYGLPSVGILLDAFTAALIGFTLNIGAYTSEIIRAAIGSVPKGQWEAA 123 Query: 125 FSVGMTRGQALRRVILPQAARVSVPPLSNSFISLVKDTSLAATITYVEIFKTAQQITATT 184 +S+GMT QA+RR ILPQA RV+VPPLSN+FISLVKDTSLAA IT E+F+ AQ+I ATT Sbjct: 124 YSIGMTWSQAMRRTILPQAGRVAVPPLSNTFISLVKDTSLAAAITVPEMFQAAQRIVATT 183 Query: 185 YEPLLLYCEAALFYLLFCSVLSVLQNYLEKRLDRYSA 221 YEPL+LY EAA+ YL SVLS LQ LE+RL+RY Sbjct: 184 YEPLILYVEAAILYLAMSSVLSALQTRLEERLNRYGG 220 >BMEII0600 [E] COG0765 ABC-type amino acid transport system, permease component Length = 244 Score = 248 bits (634), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 136/216 (62%), Positives = 166/216 (76%) Query: 6 IQIFLDSLLPLLKAGVAFTIPLAVVSFILGLLLAIFTALIRLSPWTLPRLIARFYVWIIR 65 +Q+ DSL LL AG+ FTIPL ++SF GL L + TAL+RL +ARFYVWI R Sbjct: 23 LQLMADSLPTLLWAGLIFTIPLILLSFTFGLALGLLTALVRLFAPVWLSSVARFYVWIFR 82 Query: 66 GTPLLVQLFIIFFGLPAVGIILDPFIAATIGFTLSVGAYSSEIVRAAILSIHKGQWEAAF 125 GTPLLVQLF+IF+GLP++G+ LD F AA IGFTL++GAYSSEI+RA I S+ KGQWEAA+ Sbjct: 83 GTPLLVQLFVIFYGLPSIGVYLDAFPAALIGFTLNIGAYSSEIIRAVISSVPKGQWEAAY 142 Query: 126 SVGMTRGQALRRVILPQAARVSVPPLSNSFISLVKDTSLAATITYVEIFKTAQQITATTY 185 S+GM+ QAL R ILPQA R +VPPLSN+FISL+KDTSLAA IT E+F++AQ+I ATTY Sbjct: 143 SIGMSWRQALIRTILPQATRTAVPPLSNTFISLIKDTSLAAAITVPELFQSAQRIVATTY 202 Query: 186 EPLLLYCEAALFYLLFCSVLSVLQNYLEKRLDRYSA 221 EPL+LY EAAL YL S+LS LQ LE+R RY Sbjct: 203 EPLILYIEAALIYLALSSILSALQVRLERRFGRYGG 238 >NMA0999 [E] COG0765 ABC-type amino acid transport system, permease component Length = 295 Score = 242 bits (618), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 12/228 (5%), Positives = 34/228 (14%), Gaps = 7/228 (3%) Query: 1 MDDRKIQIFLDSLLPLLKAGVAFTIPLAVVSFILGLLLAIFTALIRLSPWT------LPR 54 ++ + + + G + + Sbjct: 12 YLKTSRYLYFNDDYLEFLIYKVWGFTNPIKIIDFGCGSGYLGLKFLPLLPKGSTYIGIDK 71 Query: 55 LIARFYVWIIRGTPLLVQLFIIFFGLPAVGIILDPFIAATIGFTLSVGAYSSEIVRAAIL 114 + + L + + I L + + V ++ Sbjct: 72 GE-KLIEEAKKIFSKLPYDTEFIVSDVEQVQLWEMKYDVAICQALLLHLPDPKEVLLNMI 130 Query: 115 SIHKGQWEAAFSVGMTRGQALRRVILPQAARVSVPPLSNSFISLVKDTSLAATITYVEIF 174 + K + I S+ + + Sbjct: 131 NCVKNNGKIICIEPHWNSCMANFYIDELEEFKSINLGLLQKLYKMDKNRTGKDGNIGIKL 190 Query: 175 KTAQQITATTYEPLLLYCEAALFYLLFCSVLSVLQNYLEKRLDRYSAR 222 + + C L L S Sbjct: 191 PVYMRELGLKNVNSRVSDCVRYLNPDLCLENRELLYNLLCNEGFGSIC 238 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.330 0.143 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 14,125,777 Number of extensions: 526469 Number of successful extensions: 2354 Number of sequences better than 1.0e-05: 200 Number of HSP's gapped: 2178 Number of HSP's successfully gapped: 201 Length of query: 222 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 120 Effective length of database: 26,614,363 Effective search space: 3193723560 Effective search space used: 3193723560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 114 (48.5 bits)