BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0006.p (250 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC3327 [E] COG1126 ABC-type polar amino acid transport system, ... 340 1e-93 BS_yckI [E] COG1126 ABC-type polar amino acid transport system, ... 321 7e-88 BH0172 [E] COG1126 ABC-type polar amino acid transport system, A... 309 3e-84 NMB0789 [E] COG1126 ABC-type polar amino acid transport system, ... 298 5e-81 NMA1000 [E] COG1126 ABC-type polar amino acid transport system, ... 297 9e-81 >CAC3327 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Length = 247 Score = 340 bits (871), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 158/246 (64%), Positives = 195/246 (79%) Query: 1 MIEIRDLHKSFGPLQVLKGVDLTVEHGKVLVIIGPSGSGKTTLLRCFNLLEQPDRGSLTL 60 MI I +LHKSFG ++LKG+DL V G+ VIIGPSGSGKTTLLRC NLLE P++GS+T+ Sbjct: 1 MITISNLHKSFGNTEILKGIDLNVNKGETTVIIGPSGSGKTTLLRCINLLETPNKGSITV 60 Query: 61 GDMKLEFTAGGKIPQRSVLALRQRTGMVFQSYNLFPHMTALGNVMEGQVTVQKRTKEEAR 120 G+ ++F V+ LR++TGMVFQS+NLFPHMT L N+MEGQVTV KR+K EAR Sbjct: 61 GNSSIDFDNNNSFYTSDVINLRKKTGMVFQSFNLFPHMTVLQNIMEGQVTVLKRSKSEAR 120 Query: 121 KRAIELLTKVGLADKADAYPHQLSGGQQQRVAIARAMAVEPEVLLFDEPTSALDPELVGE 180 K+A+ LL KVGL++K D YPH+LSGGQQQRVAIARAMA++PEVLLFDEPTSALDPEL E Sbjct: 121 KKALLLLEKVGLSEKQDQYPHELSGGQQQRVAIARAMAMDPEVLLFDEPTSALDPELEAE 180 Query: 181 VLKVIKQLAAEGMTMVIVTHEMKFAADVADQIILMDGGVILEQGRPEQVLEHTTHPRALQ 240 VLKV+K+L+ EGMTM++VTH+M FA D A ++I MD G I+E G PE V +T+PR Q Sbjct: 181 VLKVMKELSNEGMTMIVVTHKMSFAKDAAHRVIFMDNGTIIEAGTPEHVFTASTNPRVKQ 240 Query: 241 FLNRLS 246 FLN +S Sbjct: 241 FLNIVS 246 >BS_yckI [E] COG1126 ABC-type polar amino acid transport system, ATPase component Length = 247 Score = 321 bits (823), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 154/245 (62%), Positives = 192/245 (78%), Gaps = 2/245 (0%) Query: 1 MIEIRDLHKSFGPLQVLKGVDLTVEHGKVLVIIGPSGSGKTTLLRCFNLLEQPDRGSLTL 60 M+ ++ L+KSFG ++LK +D+ +E GKV+ I+GPSGSGKTTLLRC N LE P+RG L Sbjct: 1 MLTVKGLNKSFGENEILKKIDMKIEKGKVIAILGPSGSGKTTLLRCLNALEIPNRGELAF 60 Query: 61 GDMKLEFTAGGKIPQRSVLALRQRTGMVFQSYNLFPHMTALGNVMEGQVTVQKRTKEEAR 120 D ++F+ K+ Q +L LR+++ MVFQ+Y+LFPH TAL NVMEG V VQKR KEE R Sbjct: 61 DDFSIDFSK--KVKQADILKLRRKSPMVFQAYHLFPHRTALENVMEGPVQVQKRNKEEVR 118 Query: 121 KRAIELLTKVGLADKADAYPHQLSGGQQQRVAIARAMAVEPEVLLFDEPTSALDPELVGE 180 K AI+LL KVGL DK D YP QLSGGQQQRV IARA+A++PE++LFDEPTSALDPELVGE Sbjct: 119 KEAIQLLDKVGLKDKMDLYPFQLSGGQQQRVGIARALAIQPELMLFDEPTSALDPELVGE 178 Query: 181 VLKVIKQLAAEGMTMVIVTHEMKFAADVADQIILMDGGVILEQGRPEQVLEHTTHPRALQ 240 VLKVIK LA EG TMV+VTHE+KFA +VAD++I +DGGVI+EQG PEQ+ R + Sbjct: 179 VLKVIKDLANEGWTMVVVTHEIKFAQEVADEVIFIDGGVIVEQGPPEQIFSAPKEERTQR 238 Query: 241 FLNRL 245 FLNR+ Sbjct: 239 FLNRI 243 >BH0172 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Length = 247 Score = 309 bits (792), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 148/242 (61%), Positives = 190/242 (78%), Gaps = 2/242 (0%) Query: 1 MIEIRDLHKSFGPLQVLKGVDLTVEHGKVLVIIGPSGSGKTTLLRCFNLLEQPDRGSLTL 60 MI ++ L+K FG ++VLKG+DLTVE GKV+V+IGPSGSGKTTLLRC N+LE P GS+ + Sbjct: 1 MIAVQSLYKKFGEVEVLKGLDLTVERGKVVVVIGPSGSGKTTLLRCLNILETPTSGSVQI 60 Query: 61 GDMKLEFTAGGKIPQRSVLALRQRTGMVFQSYNLFPHMTALGNVMEGQVTVQKRTKEEAR 120 + L+F+ GK+ + + R+ TGMVFQSYNLFPHMT L NVMEG +TV+K K + Sbjct: 61 ENQTLDFS--GKVSSKEIANFRRLTGMVFQSYNLFPHMTVLQNVMEGPMTVKKEAKAQVE 118 Query: 121 KRAIELLTKVGLADKADAYPHQLSGGQQQRVAIARAMAVEPEVLLFDEPTSALDPELVGE 180 ++A +LL KVGLADK YP QLSGGQQQRV IARA+A+EP+V+LFDEPTSALDPELVGE Sbjct: 119 EKAKQLLAKVGLADKETVYPFQLSGGQQQRVGIARALAMEPKVMLFDEPTSALDPELVGE 178 Query: 181 VLKVIKQLAAEGMTMVIVTHEMKFAADVADQIILMDGGVILEQGRPEQVLEHTTHPRALQ 240 VL+V+K+LA EGMTM++VTHEM+FA +VAD++I MD G I+E+G P+ + + R Q Sbjct: 179 VLRVMKELAEEGMTMIVVTHEMRFAQEVADEVIFMDDGKIVERGTPDDIFKTPKVERTKQ 238 Query: 241 FL 242 FL Sbjct: 239 FL 240 >NMB0789 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Length = 251 Score = 298 bits (764), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 143/253 (56%), Positives = 194/253 (76%), Gaps = 5/253 (1%) Query: 1 MIEIRDLHKSFGPLQVLKGVDLTVEHGKVLVIIGPSGSGKTTLLRCFNLLEQPDRGSLTL 60 MI+IR++HK+FG +L+G+DL V G+V+VI+GPSGSGKTT LRC N LE P+ G + Sbjct: 1 MIKIRNIHKTFGENTILRGIDLDVCKGQVVVILGPSGSGKTTFLRCLNALEMPEDGQIEF 60 Query: 61 GD---MKLEFTAGGKIPQRSVLALRQRTGMVFQSYNLFPHMTALGNVMEGQVTVQKRTKE 117 + +K++F+ K + +LALR+++GMVFQ YNLFPH TAL NVMEG V VQ + Sbjct: 61 DNERPLKIDFSK--KPSKHDILALRRKSGMVFQQYNLFPHKTALENVMEGPVAVQGKPAA 118 Query: 118 EARKRAIELLTKVGLADKADAYPHQLSGGQQQRVAIARAMAVEPEVLLFDEPTSALDPEL 177 +AR+ A++LL KVGL DK D YP+QLSGGQQQRV IARA+A++PE++LFDEPTSALDPEL Sbjct: 119 QAREEALKLLEKVGLGDKVDLYPYQLSGGQQQRVGIARALAIQPELMLFDEPTSALDPEL 178 Query: 178 VGEVLKVIKQLAAEGMTMVIVTHEMKFAADVADQIILMDGGVILEQGRPEQVLEHTTHPR 237 V +VL +K+LA EG TMV+VTHE+KFA +VA +++MDGGVI+EQG P+ + +H H R Sbjct: 179 VQDVLDTMKELAQEGWTMVVVTHEIKFALEVATTVVVMDGGVIVEQGSPQDLFDHPKHER 238 Query: 238 ALQFLNRLSGEEI 250 +FL+++ +I Sbjct: 239 TRRFLSQIQSTKI 251 >NMA1000 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Length = 202 Score = 297 bits (761), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 0/253 (0%), Positives = 0/253 (0%), Gaps = 5/253 (1%) Query: 1 MIEIRDLHKSFGPLQVLKGVDLTVEHGKVLVIIGPSGSGKTTLLRCFNLLEQPDRGSLTL 60 M + +Q + + + + + + L + + + + + Sbjct: 1 MDWSSAEGRMCMDMQSAIVIYIVLTVTGRFLSQRQRKNNRRKQLSQWRNIVKDYTAIVAV 60 Query: 61 GD---MKLEFTAGGKIPQRSVLALRQRTGMVFQSYNLFPHMTALGNVMEGQVTVQKRTKE 117 + R L + ++ + A + ++ Sbjct: 61 IATAFAMGLALL--EAALREDTVLPITSIIIGTVIVTGGWVVAWFANRKIGTNWSPIIEK 118 Query: 118 EARKRAIELLTKVGLADKADAYPHQLSGGQQQRVAIARAMAVEPEVLLFDEPTSALDPEL 177 R+ + + + G A L+ ++ + Sbjct: 119 TNRQELVTSGIYSLVRHPLYFSGFCILIGTNIYFCSKWAWIGTGIALITILFRIPIEEKK 178 Query: 178 VGEVLKVIKQLAAEGMTMVIVTHEMKFAADVADQIILMDGGVILEQGRPEQVLEHTTHPR 237 Sbjct: 179 238 Query: 238 ALQFLNRLSGEEI 250 Sbjct: 239 251 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.136 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,751,389 Number of extensions: 746244 Number of successful extensions: 12110 Number of sequences better than 1.0e-05: 2189 Number of HSP's gapped: 8068 Number of HSP's successfully gapped: 2449 Length of query: 250 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 146 Effective length of database: 26,383,695 Effective search space: 3852019470 Effective search space used: 3852019470 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 114 (48.5 bits)