BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0070.p (245 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin1849 [ET] COG0834 ABC-type amino acid transport/signal transd... 176 4e-44 SPy1274 [ET] COG0834 ABC-type amino acid transport/signal transd... 157 2e-38 CAC0380 [ET] COG0834 ABC-type amino acid transport/signal transd... 108 6e-24 BS_fliY_1 [NT] COG1776 Chemotaxis protein CheC, inhibitor of MCP... 106 4e-23 ZfliY [ET] COG0834 ABC-type amino acid transport/signal transduc... 106 4e-23 >lin1849 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 271 Score = 176 bits (445), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 92/214 (42%), Positives = 133/214 (62%), Gaps = 6/214 (2%) Query: 28 DGKLVIGIDDKFAPMGFRDDNNEIVGFDIDYAKAAAAKMGKEVTFQPIDWSAKESELNSG 87 D ++VIG+DD F PMGFRD ++ +VGFDID AKA + G + F PIDW+ KESEL +G Sbjct: 36 DKEVVIGLDDSFVPMGFRDKDDNLVGFDIDLAKAVFEEYGIKAKFTPIDWTMKESELKNG 95 Query: 88 RIDMIWNGYTITDERKEKVLFTKPYLENSQVVVVLADSALVKLDDLAGKEVGLQXXXXXX 147 ID+IWNGYT+TD RK++V F+KPY++N QV+V L S + K D+ K +G Q Sbjct: 96 SIDLIWNGYTVTDARKKQVAFSKPYMKNEQVLVTLKSSNINKFSDMKDKTLGAQNGASSI 155 Query: 148 XXXXXXP--LKAKIANVS-EFPDNV-LALTDLKSKRLDGVVIDEVVARYYMSKEKGT--Y 201 P L I N E D A DL +KR+DG++IDEV ARYY+ K+K Y Sbjct: 156 DDMAKKPEVLTDIIKNNEPELYDTFDTAFIDLNNKRIDGLIIDEVYARYYIDKQKNKDDY 215 Query: 202 KLLDESLAPEQYGIGIKKGNEALLAELQKALDEL 235 ++ P + +G++K ++ L +++ +A ++L Sbjct: 216 TIITGGFDPTDFAVGMRKSDKELQSKINEAFEKL 249 >SPy1274 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 278 Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 80/211 (37%), Positives = 126/211 (59%), Gaps = 6/211 (2%) Query: 31 LVIGIDDKFAPMGFRDDNNEIVGFDIDYAKAAAAKMGKEVTFQPIDWSAKESELNSGRID 90 + +G D+ F PMG++D++ GFDID AK + G +V FQ I+W KE+ELN+G+ID Sbjct: 43 ITVGFDNTFVPMGYKDESGRCKGFDIDLAKEVFHQYGLKVNFQAINWDMKEAELNNGKID 102 Query: 91 MIWNGYTITDERKEKVLFTKPYLENSQVVVVLADSALVKLDDLAGKEVGLQXXXXXXXXX 150 +IWNGY+IT ER++KV FT Y+ N Q++VV S + + D+ K +G Q Sbjct: 103 VIWNGYSITKERQDKVAFTDSYMRNEQIIVVKKRSDIKTISDMKHKVLGAQSASSGYDSL 162 Query: 151 XXXP--LKAKIAN--VSEFPDNVLALTDLKSKRLDGVVIDEVVARYYMSKEKG--TYKLL 204 P LK I N +++ A DLKS R+DG++ID+V A YY++KE Y+++ Sbjct: 163 LRTPKLLKDFIKNKDANQYETFTQAFIDLKSDRIDGILIDKVYANYYLAKEGQLENYRMI 222 Query: 205 DESLAPEQYGIGIKKGNEALLAELQKALDEL 235 + E + +G++K ++ L A++ +A L Sbjct: 223 PTTFENEAFSVGLRKEDKTLQAKINRAFRVL 253 >CAC0380 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 272 Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 110/228 (48%), Gaps = 15/228 (6%) Query: 20 GCS--GSKGDD---------GKLVIGIDDKFAPMGFRDDNNEIVGFDIDYAKAAAAKMGK 68 GCS GS +D G L +G+ D + PM FRD NN++ GFDID A KMG Sbjct: 24 GCSSTGSSSNDESLSKVKKAGVLKVGLSDDYPPMEFRDSNNKVSGFDIDMINAIGKKMGV 83 Query: 69 EVTFQPIDWSAKESELNSGRIDMIWNGYTITDERKEKVLFTKPYLENSQVVVV-LADSAL 127 +V + L + + DM+ + +ITDERK +LF+ PY+ V V +++ + Sbjct: 84 KVQIVTNSFDGIFVALKAKKFDMVQSCVSITDERKSTLLFSDPYIYGGVAVFVKKSNTTI 143 Query: 128 VKLDDLAGKEVGLQXXXXXXXXXXXXPLKAKIANVSEFPDNVLALTDLKSKRLDGVVIDE 187 K +DL GK VG Q + ++ A DL++ R++ VV D Sbjct: 144 KKPEDLKGKVVGCQAGTTAEDALKKF---NGLKETKKYQQTTDAFLDLENNRIEAVVADP 200 Query: 188 VVARYYMSKEKGTYKLLDESLAPEQYGIGIKKGNEALLAELQKALDEL 235 +V YY +K G Y+ + + L E G +K ++ L QKA +EL Sbjct: 201 MVGDYYTTKNPGKYEKISKYLGKEPVGAAFRKQDKTLKDAYQKAYNEL 248 >BS_fliY_1 [NT] COG1776 Chemotaxis protein CheC, inhibitor of MCP methylation Length = 264 Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 10/209 (4%), Positives = 44/209 (21%), Gaps = 5/209 (2%) Query: 29 GKLVIGIDDKFAPMGFRDDNNEIVGFDIDYAKAAAAKMGKEVTFQPIDWSAKESELNSGR 88 + I + N+ V + +P Sbjct: 41 IGEIGNISFGSSATALSTLLNQKVDITTPSVTVIPRSKISDAFPEPYVAIEVNYTEGFSG 100 Query: 89 IDMIWNGYTITDERKEKVLFTKPY-LENSQVVVVLADSALVKL-DDLAGKEVGLQXXXXX 146 +++ + + ++ + S + L+ + Sbjct: 101 SNLLVVEQSDAAIIADLMIGGDGKGADPSLGEIHLSAVQEAMNQMMGSAATSMSTVFSKK 160 Query: 147 XXXXXXXPLKAKIANVSEFPDNVLALTDLKSKRLDGVVIDEVVARYYMSKEKGTYKLLDE 206 + ++ +V+E D ++ + + + + D Sbjct: 161 IDISPP---RVELLDVTEEKGTDRIPDDEMLVKVSFNLKVGELIDSSIMQLYPLTFAKDL 217 Query: 207 SLAPEQYGIGIKKGNEALLAELQKALDEL 235 + ++ ++ + + Sbjct: 218 ISSLMNSESAEEEETVQPEVTYEQPKEPV 246 >ZfliY [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 266 Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 112/209 (53%), Gaps = 5/209 (2%) Query: 29 GKLVIGIDDKFAPMGFRDDNNEIVGFDIDYAKAAAAKMGKEVTFQPIDWSAKESELNSGR 88 G L++G++ + P F+ D+ ++ GF++++A+ A +G E + +P W + L+S R Sbjct: 41 GTLLVGLEGTYPPFSFQGDDGKLTGFEVEFAQQLAKHLGVEASLKPTKWDGMLASLDSKR 100 Query: 89 IDMIWNGYTITDERKEKVLFTKPY-LENSQVVVVLADSALVKL-DDLAGKEVGLQXXXXX 146 ID++ N TI+DERK+K F+ PY + Q +V + +K DDL GK+VG+ Sbjct: 101 IDVVINQVTISDERKKKYDFSTPYTISGIQALVKKGNEGTIKTADDLKGKKVGVGLGTNY 160 Query: 147 XXXXXXXPLKAKIANVSEFPDNVLALTDLKSKRLDGVVIDEVVARYYMSKEKGTYKLLDE 206 + +V + D+ DL+ R+D +++D + A + K T + E Sbjct: 161 EEWLRQ---NVQGVDVRTYDDDPTKYQDLRVGRIDAILVDRLAALDLVKKTNDTLAVTGE 217 Query: 207 SLAPEQYGIGIKKGNEALLAELQKALDEL 235 + + ++ G+ ++KGNE LL + A+ E+ Sbjct: 218 AFSRQESGVALRKGNEDLLKAVNDAIAEM 246 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.314 0.135 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,502,823 Number of extensions: 572550 Number of successful extensions: 1095 Number of sequences better than 1.0e-05: 138 Number of HSP's gapped: 994 Number of HSP's successfully gapped: 141 Length of query: 245 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 141 Effective length of database: 26,383,695 Effective search space: 3720100995 Effective search space used: 3720100995 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 114 (48.5 bits)