BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0069.p (157 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin1851 [E] COG0765 ABC-type amino acid transport system, permea... 115 4e-26 SPy1276 [E] COG0765 ABC-type amino acid transport system, permea... 101 4e-22 CAC3619 [E] COG0765 ABC-type amino acid transport system, permea... 86 2e-17 ZyecS [E] COG0765 ABC-type amino acid transport system, permease... 82 5e-16 ECs2656 [E] COG0765 ABC-type amino acid transport system, permea... 82 5e-16 >lin1851 [E] COG0765 ABC-type amino acid transport system, permease component Length = 213 Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 63/144 (43%), Positives = 88/144 (61%), Gaps = 5/144 (3%) Query: 3 IDYIIKIAGPMLEGARTTXXXXXXXXXXXXXXGMLVTLMAKSSIKPLAWIAHTYIYVMRG 62 +DYI++I +L+GA+TT G +V + S I PL +I + YI++MRG Sbjct: 1 MDYIMEILPALLDGAKTTLLVFVVTLVCSIPLGAIVAVGNISKIAPLKFILNIYIWIMRG 60 Query: 63 TPXXXXXXXXXXXXPQIPVIGQYLVLDRFVAASLGFILNYGAYFAEIFRGGLLSIDKGQH 122 TP +P+IG +V DR A + FILNY AYFAEIFRGG LSI+ GQ+ Sbjct: 61 TPLLLQLIFIYY---GLPIIG--VVFDRMDAVFIAFILNYAAYFAEIFRGGFLSIENGQY 115 Query: 123 EAAQVLGLSKWQTLRKVILAQMFR 146 E+A+VLGL+ QTLRK++L Q+ + Sbjct: 116 ESAKVLGLTYGQTLRKIVLPQVVK 139 >SPy1276 [E] COG0765 ABC-type amino acid transport system, permease component Length = 213 Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 55/143 (38%), Positives = 76/143 (53%), Gaps = 5/143 (3%) Query: 5 YIIKIAGPMLEGARTTXXXXXXXXXXXXXXGMLVTLMAKSSIKPLAWIAHTYIYVMRGTP 64 YI ++ +L+GA T G ++ + K KPL W Y+++MRGTP Sbjct: 3 YIQQVLPSLLDGALVTLQVFFIVIILSIPLGAILAFLMKIPFKPLQWFLTLYVWMMRGTP 62 Query: 65 XXXXXXXXXXXXPQIPVIGQYLVLDRFVAASLGFILNYGAYFAEIFRGGLLSIDKGQHEA 124 P + + DR AA L F LNY AYFAEIFRGG+ +I KGQ+EA Sbjct: 63 LLLQLIFFYYVLPSVGI-----SFDRMPAAILAFTLNYAAYFAEIFRGGIEAIPKGQYEA 117 Query: 125 AQVLGLSKWQTLRKVILAQMFRV 147 A+VL L QT+R +IL Q+F++ Sbjct: 118 AKVLKLKPLQTIRYIILPQVFKI 140 >CAC3619 [E] COG0765 ABC-type amino acid transport system, permease component Length = 217 Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 80/157 (50%), Gaps = 5/157 (3%) Query: 1 MNIDYIIKIAGPMLEGARTTXXXXXXXXXXXXXXGMLVTLMAKSSIKPLAWIAHTYIYVM 60 M+I + K+ +L+G R T G ++ + SS+K L I Y +++ Sbjct: 1 MDISSLNKVIPVLLDGTRITLLLTCSSIIIGCIIGTIIAMFKTSSVKVLNLIGKFYTWIL 60 Query: 61 RGTPXXXXXXXXXXXXPQIPVIGQYLVLDRFVAASLGFILNYGAYFAEIFRGGLLSIDKG 120 RGTP +P + L + AA LG LN GAY AEI RGG+L+ID G Sbjct: 61 RGTPLLLQLYVYYY---GLPFLSDKLTMTPMKAAILGLSLNSGAYIAEIIRGGILAIDNG 117 Query: 121 QHEAAQVLGLSKWQTLRKVILAQMFRVXXXXSACGSQ 157 Q EA++ LGL+ QT++++IL Q RV CG++ Sbjct: 118 QFEASKALGLTYGQTMKRIILPQAIRV--VIPPCGNE 152 >ZyecS [E] COG0765 ABC-type amino acid transport system, permease component Length = 222 Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 46/113 (40%), Positives = 60/113 (53%), Gaps = 5/113 (4%) Query: 35 GMLVTLMAKSSIKPLAWIAHTYIYVMRGTPXXXXXXXXXXXXPQIPVIGQYLVLDRFVAA 94 G ++ LM S I P+ W+A YI + RGTP PQ + LD +A Sbjct: 37 GFILALMRLSPIWPVRWLARFYISIFRGTPLIAQLFMIYYGLPQFGI-----ELDPIPSA 91 Query: 95 SLGFILNYGAYFAEIFRGGLLSIDKGQHEAAQVLGLSKWQTLRKVILAQMFRV 147 +G LN AY AE R + SIDKGQ EAA +G++ WQT+R+ IL Q RV Sbjct: 92 MIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTPWQTMRRAILPQAARV 144 >ECs2656 [E] COG0765 ABC-type amino acid transport system, permease component Length = 222 Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 46/113 (40%), Positives = 60/113 (53%), Gaps = 5/113 (4%) Query: 35 GMLVTLMAKSSIKPLAWIAHTYIYVMRGTPXXXXXXXXXXXXPQIPVIGQYLVLDRFVAA 94 G ++ LM S I P+ W+A YI + RGTP PQ + LD +A Sbjct: 37 GFILALMRLSPIWPVRWLARFYISIFRGTPLIAQLFMIYYGLPQFGI-----ELDPIPSA 91 Query: 95 SLGFILNYGAYFAEIFRGGLLSIDKGQHEAAQVLGLSKWQTLRKVILAQMFRV 147 +G LN AY AE R + SIDKGQ EAA +G++ WQT+R+ IL Q RV Sbjct: 92 MIGLSLNTAAYTAETLRAAISSIDKGQWEAAASIGMTPWQTMRRAILPQAARV 144 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.140 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 8,833,959 Number of extensions: 267486 Number of successful extensions: 970 Number of sequences better than 1.0e-05: 142 Number of HSP's gapped: 902 Number of HSP's successfully gapped: 142 Length of query: 157 Length of database: 38,378,431 Length adjustment: 98 Effective length of query: 59 Effective length of database: 27,075,699 Effective search space: 1597466241 Effective search space used: 1597466241 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 111 (47.4 bits)