BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0067.p (244 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC3618 [E] COG1126 ABC-type polar amino acid transport system, ... 286 3e-77 CAC0112 [E] COG1126 ABC-type polar amino acid transport system, ... 284 8e-77 lin2353 [E] COG1126 ABC-type polar amino acid transport system, ... 277 1e-74 SA1674 [E] COG1126 ABC-type polar amino acid transport system, A... 274 9e-74 CAC0378 [E] COG1126 ABC-type polar amino acid transport system, ... 268 5e-72 >CAC3618 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Length = 243 Score = 286 bits (731), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 140/243 (57%), Positives = 176/243 (72%), Gaps = 4/243 (1%) Query: 1 MIEVRQLQKSFGSLDVLKKITFAVNPGEVVAVIGPSGSGKSTMLRSLVHLEEVTGGSIYI 60 MIE + L K+FG L V + + ++ GEV+ +IGPSGSGKST LR L HLEE GG + I Sbjct: 3 MIEAKNLTKTFGKLTVFEDLNVNISKGEVLVIIGPSGSGKSTFLRCLNHLEEPNGGQVII 62 Query: 61 HGKPLIENGKYAGNTDIREITATMGMVFQHFNLFPHLSVRGNLELAPRTLKRGNPQEIAA 120 G+ L + REI GMVFQ +NLFPH++V N+ AP T+K+ N E+ Sbjct: 63 EGEVL----NHKDKKKYREIIEKTGMVFQSYNLFPHMTVLQNVMEAPITVKKENKSEVRK 118 Query: 121 KSKELLSKVGLADKADVYPSMLSGGQKQRVAIARALMLNPDILLFDEPTSALDPELTGEV 180 +++ LL KVGL+DK +VYPS LSGGQKQRVAIARAL + PDI+LFDEPTSALDPEL GEV Sbjct: 119 RAEALLYKVGLSDKMNVYPSKLSGGQKQRVAIARALCMQPDIMLFDEPTSALDPELVGEV 178 Query: 181 LRVIRQLAEENMTMIIVTHEMSFARDVADRVFFMDNGEIAESGPPEQIFGSPRLERTRTF 240 L V+++LAEE MTM++VTHEM FAR+VADRV FMD G+I E PE IF +P+ ERT+ F Sbjct: 179 LSVMKELAEEGMTMVVVTHEMGFAREVADRVIFMDGGKIVEENTPEGIFTNPKEERTKEF 238 Query: 241 LNR 243 LN+ Sbjct: 239 LNK 241 >CAC0112 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Length = 245 Score = 284 bits (727), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 138/242 (57%), Positives = 179/242 (73%), Gaps = 5/242 (2%) Query: 2 IEVRQLQKSFGSLDVLKKITFAVNPGEVVAVIGPSGSGKSTMLRSLVHLEEVTGGSIYIH 61 IEV++L+KS+GS +VLK+I ++ EVV +IGPSGSGKST+LR + LEE+T G + I Sbjct: 7 IEVKELKKSYGSNEVLKEINLTIDRSEVVCIIGPSGSGKSTLLRCMNRLEEITAGQLMID 66 Query: 62 GKPLIENGKYAGNTDIREITATMGMVFQHFNLFPHLSVRGNLELAPRTLKRGNPQEIAAK 121 GK + + N +I ++ +GMVFQHFNLFPHLSV N+ AP L + + +E Sbjct: 67 GKDISDK-----NINIDKLRENVGMVFQHFNLFPHLSVLKNITFAPIELNKMSKEEAEKT 121 Query: 122 SKELLSKVGLADKADVYPSMLSGGQKQRVAIARALMLNPDILLFDEPTSALDPELTGEVL 181 + +LL KVGL DKA+ YP LSGGQKQRVAIARAL +NPDI+LFDEPTSALDPE+ GEVL Sbjct: 122 AFKLLDKVGLNDKANTYPDKLSGGQKQRVAIARALAMNPDIMLFDEPTSALDPEMVGEVL 181 Query: 182 RVIRQLAEENMTMIIVTHEMSFARDVADRVFFMDNGEIAESGPPEQIFGSPRLERTRTFL 241 V++ LA+E MTM++VTHEM FAR+VADRV FM +G I E G P+ IF +P +RT+ FL Sbjct: 182 GVMKDLAKEGMTMVVVTHEMGFAREVADRVIFMADGYIVEQGTPDDIFKNPTQDRTKDFL 241 Query: 242 NR 243 N+ Sbjct: 242 NK 243 >lin2353 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Length = 64 Score = 277 bits (708), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 0/243 (0%), Positives = 0/243 (0%), Gaps = 5/243 (2%) Query: 1 MIEVRQLQKSFGSLDVLKKITFAVNPGEVVAVIGPSGSGKSTMLRSLVHLEEVTGGSIYI 60 M F + + + +L + T G+ Sbjct: 1 MRYDNVKPCPFCGCPSVTVKAISGYYRAKCNGCESRTGYGGSEKEALERWNKRTTGNNNG 60 Query: 61 HGKPLIENGKYAGNTDIREITATMGMVFQHFNLFPHLSVRGNLELAPRTLKRGNPQEIAA 120 Sbjct: 61 ----- 115 Query: 121 KSKELLSKVGLADKADVYPSMLSGGQKQRVAIARALMLNPDILLFDEPTSALDPELTGEV 180 Sbjct: 116 175 Query: 181 LRVIRQLAEENMTMIIVTHEMSFARDVADRVFFMDNGEIAESGPPEQIFGSPRLERTRTF 240 Sbjct: 176 235 Query: 241 LNR 243 Sbjct: 236 238 >SA1674 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Length = 242 Score = 274 bits (700), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 135/243 (55%), Positives = 176/243 (72%), Gaps = 5/243 (2%) Query: 1 MIEVRQLQKSFGSLDVLKKITFAVNPGEVVAVIGPSGSGKSTMLRSLVHLEEVTGGSIYI 60 +I++ L K FG +VLK I +N GEVVA+IGPSGSGKST+LR + LE T G + Sbjct: 3 VIKINNLNKVFGDNEVLKDINLEINQGEVVAIIGPSGSGKSTLLRCMNLLEVPTKGQVIF 62 Query: 61 HGKPLIENGKYAGNTDIREITATMGMVFQHFNLFPHLSVRGNLELAPRTLKRGNPQEIAA 120 G L E G T + ++ MGMVFQ+FNLFPH V N+ LAP+ LK+ N E+ Sbjct: 63 EGNDLTEKG-----TQVDKLRQKMGMVFQNFNLFPHKKVVDNIILAPKLLKKDNNDELHK 117 Query: 121 KSKELLSKVGLADKADVYPSMLSGGQKQRVAIARALMLNPDILLFDEPTSALDPELTGEV 180 ++ LL KVGL +KADVYP+ LSGGQKQRVAIARAL ++PD++LFDEPTSALDPE+ G+V Sbjct: 118 EALSLLDKVGLKEKADVYPNQLSGGQKQRVAIARALAMHPDVILFDEPTSALDPEVVGDV 177 Query: 181 LRVIRQLAEENMTMIIVTHEMSFARDVADRVFFMDNGEIAESGPPEQIFGSPRLERTRTF 240 L+V++ LA+E MTM++VTHEM FA+DV+D+V FM +G + ESG P +IF P+ ERT+ F Sbjct: 178 LKVMKDLAKEGMTMVVVTHEMGFAKDVSDKVIFMADGVVVESGTPVEIFEQPQHERTQNF 237 Query: 241 LNR 243 L R Sbjct: 238 LAR 240 >CAC0378 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Length = 243 Score = 268 bits (686), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 140/245 (57%), Positives = 170/245 (69%), Gaps = 8/245 (3%) Query: 1 MIEVRQLQKSFGSLDVLKKITFAVNPGEVVAVIGPSGSGKSTMLRSLVHLEEVTGGSIYI 60 MIE L K FG L V K + V GEV+ +IGPSGSGKST LR + HLE GS+ I Sbjct: 3 MIETCGLTKVFGKLTVFKDLNIKVKRGEVLVIIGPSGSGKSTFLRCINHLEIPEKGSVVI 62 Query: 61 HGKPLIENGK--YAGNTDIREITATMGMVFQHFNLFPHLSVRGNLELAPRTLKRGNPQEI 118 G+ + K Y G I MGMVFQ FNLFPH++V N+ AP T+K+ + Sbjct: 63 EGEKIDSKNKKTYKG------IIEKMGMVFQGFNLFPHMTVLENVMEAPITVKKEAKAVV 116 Query: 119 AAKSKELLSKVGLADKADVYPSMLSGGQKQRVAIARALMLNPDILLFDEPTSALDPELTG 178 +++EL+ KVGL DK +VYPS LSGGQKQRVAIARAL + PDI+LFDEPTSALDPEL G Sbjct: 117 KKRAEELIDKVGLIDKCNVYPSKLSGGQKQRVAIARALCMQPDIMLFDEPTSALDPELVG 176 Query: 179 EVLRVIRQLAEENMTMIIVTHEMSFARDVADRVFFMDNGEIAESGPPEQIFGSPRLERTR 238 EVL V++ LA E MTM++VTHEM FAR+V+DRV FMD G+I E G PE IF +P+ ERTR Sbjct: 177 EVLNVMKDLAREGMTMVVVTHEMGFAREVSDRVIFMDGGKIVEEGKPEDIFNNPKEERTR 236 Query: 239 TFLNR 243 FLN+ Sbjct: 237 AFLNK 241 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,175,462 Number of extensions: 786900 Number of successful extensions: 21629 Number of sequences better than 1.0e-05: 2210 Number of HSP's gapped: 17595 Number of HSP's successfully gapped: 2498 Length of query: 244 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 140 Effective length of database: 26,383,695 Effective search space: 3693717300 Effective search space used: 3693717300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 114 (48.5 bits)