BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0579.0063.p
         (1033 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin0153_2 [R] COG3979 Uncharacterized protein contain chitin-bin...    60   2e-08
lin2611_2 [R] COG3979 Uncharacterized protein contain chitin-bin...    54   2e-06

>lin0153_2 [R] COG3979 Uncharacterized protein contain chitin-binding domain
           type 3
          Length = 141

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 56/100 (56%), Gaps = 3/100 (3%)

Query: 29  EAPSTPAGLEVAIERRTSVDLRWNQATDAGSGIKGYRVSYADGTFIADTFGTSYSISGLT 88
           EAP+ P  L  +     SV L W  +TD    + GY+V Y +GT +    GT+++ SGLT
Sbjct: 1   EAPTVPKSLASSNVTDKSVTLSWTASTD-NKAVAGYKV-YRNGTEVGSVSGTTFTDSGLT 58

Query: 89  PETEYAFQVQALDYAGNVSAASAHVRAVTKGEDREAPALP 128
            +T Y + V+A D AGN SAAS+ +  VT  +    PA P
Sbjct: 59  AKTAYTYTVKAYDAAGNFSAASSALT-VTTLDAATPPATP 97


>lin2611_2 [R] COG3979 Uncharacterized protein contain chitin-binding domain
           type 3
          Length = 184

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 2/92 (2%)

Query: 27  DKEAPSTPAGLEVAIERRTSVDLRWNQATDAGSGIKGYRVSYADGTFIADTFGTSYSISG 86
           D EAP+ P GL    +  T++ L W  +TD    +K Y + Y + T IA T  T +  + 
Sbjct: 1   DNEAPTAPKGLMSHAQTDTTIALCWQASTD-NVEVKNYEL-YRNNTKIATTTSTMFEDTK 58

Query: 87  LTPETEYAFQVQALDYAGNVSAASAHVRAVTK 118
           L  +T Y+++V A+D +GN S  S  + A TK
Sbjct: 59  LASDTSYSYKVYAVDTSGNRSLVSNEITAKTK 90


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.313    0.130    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 78,183,316
Number of extensions: 3337935
Number of successful extensions: 4223
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4224
Number of HSP's successfully gapped: 2
Length of query: 1033
Length of database: 38,378,431
Length adjustment: 116
Effective length of query: 917
Effective length of database: 24,999,687
Effective search space: 22924712979
Effective search space used: 22924712979
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 121 (51.2 bits)