BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0579.0038.p
         (93 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ppsE_2 [Q] COG3319 Thioesterase domains of type I polyketide ...   174   3e-44
BS_ppsA_1 [Q] COG1020 Non-ribosomal peptide synthetase modules a...   174   3e-44
BS_ppsA_2 [Q] COG1020 Non-ribosomal peptide synthetase modules a...   174   3e-44
BS_pps [G] COG0574 Phosphoenolpyruvate synthase/pyruvate phospha...   174   3e-44
CAC0534 [G] COG0574 Phosphoenolpyruvate synthase/pyruvate phosph...   174   3e-44

>BS_ppsE_2 [Q] COG3319 Thioesterase domains of type I polyketide synthases or
           non-ribosomal peptide synthetases
          Length = 211

 Score =  174 bits (441), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 0/93 (0%), Positives = 0/93 (0%)

Query: 1   VIEGRARVIVNMEAADLEEGDILVTTFTDPSWTPLFVSIKGLVTEVGGLMTHGAVIAREY 60
                                                                       
Sbjct: 774                                                              833

Query: 61  GLPAVVGVENATRLIADGQRIRVNGTEGYIEIL 93
                                            
Sbjct: 834                                   866


>BS_ppsA_1 [Q] COG1020 Non-ribosomal peptide synthetase modules and related
           proteins
          Length = 792

 Score =  174 bits (441), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 0/93 (0%), Positives = 0/93 (0%)

Query: 1   VIEGRARVIVNMEAADLEEGDILVTTFTDPSWTPLFVSIKGLVTEVGGLMTHGAVIAREY 60
                                                                       
Sbjct: 774                                                              833

Query: 61  GLPAVVGVENATRLIADGQRIRVNGTEGYIEIL 93
                                            
Sbjct: 834                                   866


>BS_ppsA_2 [Q] COG1020 Non-ribosomal peptide synthetase modules and related
           proteins
          Length = 792

 Score =  174 bits (441), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 0/93 (0%), Positives = 0/93 (0%)

Query: 1   VIEGRARVIVNMEAADLEEGDILVTTFTDPSWTPLFVSIKGLVTEVGGLMTHGAVIAREY 60
                                                                       
Sbjct: 774                                                              833

Query: 61  GLPAVVGVENATRLIADGQRIRVNGTEGYIEIL 93
                                            
Sbjct: 834                                   866


>BS_pps [G] COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate
           dikinase
          Length = 866

 Score =  174 bits (441), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 84/93 (90%), Positives = 89/93 (95%)

Query: 1   VIEGRARVIVNMEAADLEEGDILVTTFTDPSWTPLFVSIKGLVTEVGGLMTHGAVIAREY 60
           VIEGRARVI+NME ADLE+GDILVT+FTDPSWTPLFVSIKGLVTEVGGLMTHGAVIAREY
Sbjct: 774 VIEGRARVILNMEDADLEDGDILVTSFTDPSWTPLFVSIKGLVTEVGGLMTHGAVIAREY 833

Query: 61  GLPAVVGVENATRLIADGQRIRVNGTEGYIEIL 93
           GLPAVVGVENA +LI DGQRIRV+GTEGYIEI 
Sbjct: 834 GLPAVVGVENAAKLIKDGQRIRVHGTEGYIEIF 866


>CAC0534 [G] COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate
           dikinase
          Length = 868

 Score =  174 bits (441), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 83/93 (89%), Positives = 90/93 (96%)

Query: 1   VIEGRARVIVNMEAADLEEGDILVTTFTDPSWTPLFVSIKGLVTEVGGLMTHGAVIAREY 60
           VIEGRARVI+NME A+LE GDILVT+FTDPSWTPLFVSIKGLVTEVGGLMTHGAVIAREY
Sbjct: 776 VIEGRARVILNMEDANLEAGDILVTSFTDPSWTPLFVSIKGLVTEVGGLMTHGAVIAREY 835

Query: 61  GLPAVVGVENATRLIADGQRIRVNGTEGYIEIL 93
           GLPAV+GVENAT+LI DGQ+IRVNGTEGY+EIL
Sbjct: 836 GLPAVIGVENATKLIKDGQQIRVNGTEGYVEIL 868


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.140    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 7,059,179
Number of extensions: 267514
Number of successful extensions: 786
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 784
Number of HSP's successfully gapped: 32
Length of query: 93
Length of database: 38,378,431
Length adjustment: 62
Effective length of query: 31
Effective length of database: 31,227,723
Effective search space: 968059413
Effective search space used: 968059413
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)