BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0579.0034.p
         (159 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC0451 [T] COG0642 Signal transduction histidine kinase              117   7e-27
BS_resE_4 [T] COG0642 Signal transduction histidine kinase             81   8e-16
lin1543 [T] COG0642 Signal transduction histidine kinase               80   2e-15
lin2727 [T] COG0642 Signal transduction histidine kinase               78   5e-15
BS_phoR_3 [T] COG0642 Signal transduction histidine kinase             77   1e-14

>CAC0451 [T] COG0642 Signal transduction histidine kinase
          Length = 416

 Score =  117 bits (293), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 95/160 (59%), Gaps = 4/160 (2%)

Query: 1   MDAKTIQFKKDRIPVKNLIQKALEPVMIPM-DIKGQTVSIAGDDDVSFAGDFNWTVEAVI 59
           +DA  I FK ++  ++  + +++  ++ PM  +K Q VS+   D   F  D  W +EA  
Sbjct: 256 LDAGAIDFKNEKRSIEETVCESI-SLLKPMYTLKNQKVSVESTDKAYFKHDKKWLLEAFS 314

Query: 60  NILKNGVEHTHEGGAITITFSENTLFTEIVIADNGKGIPKEDLPYIFKRFYKGKNA-GEG 118
           NI+KN +EHT + G I I    + +  ++ I DNG GI K+DLP+IF+RFYKGK    + 
Sbjct: 315 NIIKNCIEHTGDNGEIKIHVYRSPIMVKVTIEDNGSGISKDDLPHIFERFYKGKGVYNKS 374

Query: 119 SIGIGLAMAHSIIASQNGVIDVTSGSGKGTQFRIKF-YKQ 157
           S GIGL+MA SII +Q G I V S    GT F I F Y+Q
Sbjct: 375 STGIGLSMAKSIIENQGGFITVKSAVSAGTIFNIVFLYEQ 414


>BS_resE_4 [T] COG0642 Signal transduction histidine kinase
          Length = 269

 Score = 80.9 bits (198), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 70/126 (55%), Gaps = 10/126 (7%)

Query: 38  SIAGDDDVS-----FAGDFNWTVEAVINILKNGVEHTHEGGAITITFSENTLFTEIVIAD 92
           +IA D D+S     F  D +   +   N++ N + HT  GG+++I+        +I I D
Sbjct: 141 NIALDHDISLTEEEFMFDEDKMEQVFTNLIDNALRHTSAGGSVSISVHSVKDGLKIDIKD 200

Query: 93  NGKGIPKEDLPYIFKRFYKGKNA---GEGSIGIGLAMAHSIIASQNGVIDVTSGSGKGTQ 149
           +G GIP+EDLP+IF+RFYK   A   G    G+GLA+  +I+ + NG I V S   KGT 
Sbjct: 201 SGSGIPEEDLPFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTT 260

Query: 150 FRIKFY 155
           F   FY
Sbjct: 261 F--SFY 264


>lin1543 [T] COG0642 Signal transduction histidine kinase
          Length = 182

 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 0/153 (0%), Positives = 0/153 (0%), Gaps = 5/153 (3%)

Query: 6   IQFKKDRIPVKNLIQKALEPVMIPMDIKGQTVSIAGDDDVSFAGDFNWTVEAVINILKNG 65
                                                                       
Sbjct: 320                                                              379

Query: 66  VEHTHEGGAITITFSENTLFTEIVIADNGKGIPKEDLPYIFKRFYKG----KNAGEGSIG 121
                                                                       
Sbjct: 380 -                                                            438

Query: 122 IGLAMAHSIIASQNGVIDVTSGSGKGTQFRIKF 154
                                            
Sbjct: 439                                   471


>lin2727 [T] COG0642 Signal transduction histidine kinase
          Length = 182

 Score = 78.2 bits (191), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 0/116 (0%), Positives = 0/116 (0%), Gaps = 3/116 (2%)

Query: 44  DVSFAGDFNWTVEAVINILKNGVEHTHEGGAITITFSENTLFTEIVIADNGKGIPKEDLP 103
                                                                       
Sbjct: 343                                                              402

Query: 104 YIFKRFYKG---KNAGEGSIGIGLAMAHSIIASQNGVIDVTSGSGKGTQFRIKFYK 156
                                                                   
Sbjct: 403                                                          458


>BS_phoR_3 [T] COG0642 Signal transduction histidine kinase
          Length = 431

 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 8/130 (6%), Positives = 23/130 (17%), Gaps = 4/130 (3%)

Query: 31  DIKGQTVSIAGDDDVSF-AGDFNWTVEAVINILKNGVEHTHEGGAITITFSENTLFTEIV 89
               +             +   N  +    ++    + +TH+   +           E  
Sbjct: 144 LNLLRYPEFTQYLKTRDFSRPLNLVLNTGRHLEIRVMPYTHKQLLMVARDVTQMHQLEGA 203

Query: 90  IADNGKGIPKEDLPYIFKRFY---KGKNAGEGSIGIGLAMAHSIIASQNGVIDVTSGSGK 146
             +    +  E    +                      A+      +Q     V      
Sbjct: 204 RRNFFANVSHELRTPLTVLQGYLEMMNEQPLEGAVREKALHTMREQTQRMEGLVKQLLTL 263

Query: 147 GTQFRIKFYK 156
                   + 
Sbjct: 264 SKIEAAPTHL 273


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.138    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 12,035,916
Number of extensions: 548498
Number of successful extensions: 1499
Number of sequences better than 1.0e-05: 157
Number of HSP's gapped: 1459
Number of HSP's successfully gapped: 157
Length of query: 159
Length of database: 38,378,431
Length adjustment: 98
Effective length of query: 61
Effective length of database: 27,075,699
Effective search space: 1651617639
Effective search space used: 1651617639
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)