BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0032.p (229 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0453 [V] COG1136 ABC-type antimicrobial peptide transport sys... 276 2e-74 Cgl2501 [V] COG1136 ABC-type antimicrobial peptide transport sys... 217 1e-56 TM0705 [V] COG1136 ABC-type antimicrobial peptide transport syst... 200 2e-51 BS_yvcR [V] COG1136 ABC-type antimicrobial peptide transport sys... 197 1e-50 MJ0796 [V] COG1136 ABC-type antimicrobial peptide transport syst... 197 2e-50 >CAC0453 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 276 bits (707), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 16/226 (7%), Positives = 39/226 (17%) Query: 3 MEILRIEHLSKIYGTGESAVKALDEVSFSVQKGEFXXXXGPSGSGKSTLLHMLGGVDRPS 62 M+ I I+ G + + + R S Sbjct: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 Query: 63 GGKVFVEDTDMYALNETQLAIFRRRQIGLIYQFFNLLPVLTVEENMTLPLLLDNQKVDQK 122 V + T L+ F +Q + + + Sbjct: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 Query: 123 QLDGLVHTLHLQHRLNHLPNQLSGGQQQRVSIGRALIGNPAIMLADEPTGNLDSKNSNEI 182 + + L I D Sbjct: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 Query: 183 IDLLKMLNKTYHQTLIVITHDERIALQADRIISIEDGRIAKDEVIR 228 ++ + + + T +++ + E + Sbjct: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVM 226 >Cgl2501 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 217 bits (553), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 12/215 (5%), Positives = 34/215 (15%) Query: 7 RIEHLSKIYGTGESAVKALDEVSFSVQKGEFXXXXGPSGSGKSTLLHMLGGVDRPSGGKV 66 + I S ++ S + + Sbjct: 47 GHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS 106 Query: 67 FVEDTDMYALNETQLAIFRRRQIGLIYQFFNLLPVLTVEENMTLPLLLDNQKVDQKQLDG 126 + + L+ V + ++ + Sbjct: 107 PEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHD 166 Query: 127 LVHTLHLQHRLNHLPNQLSGGQQQRVSIGRALIGNPAIMLADEPTGNLDSKNSNEIIDLL 186 + + + N+ Q + A AD ++ Sbjct: 167 FLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVM 226 Query: 187 KMLNKTYHQTLIVITHDERIALQADRIISIEDGRI 221 I + + + I Sbjct: 227 FTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDI 261 >TM0705 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 200 bits (508), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 15/222 (6%), Positives = 36/222 (16%), Gaps = 5/222 (2%) Query: 5 ILRIEHLSKIYGTGESAVKALDEVSFSVQKGEFXXXXGPSGSGKSTLLHMLGGVDRPSGG 64 I L G + + + R S Sbjct: 4 AGIIRDLLIWL-EGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 Query: 65 KVFVEDTDMYALNETQLAIFRRRQIGLIYQFFNLLPVLTVEENMTLPLLL--DNQKVDQK 122 V + T L+ F +Q + + Sbjct: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 Query: 123 QLDGLVHTLHLQHRLNHLPNQLSGGQQQRVSIGRALIGNPAIMLADEPTGNLDSKNSNEI 182 + L+ Q +++S R + + Sbjct: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 Query: 183 IDLLKMLNKTYHQTLIVITHDERIALQADRIISIEDGRIAKD 224 + + T +++ + Sbjct: 183 ETRPSQDKD--DEQEVFYTTALAQDQADGYVLTGHPVMLQGG 222 >BS_yvcR [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 197 bits (501), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 18/223 (8%), Positives = 47/223 (21%), Gaps = 4/223 (1%) Query: 3 MEILRIEHLSKIYGT--GESAVKALDEVSFSVQKGEFXXXXGPSGSGKSTLLHMLGGVDR 60 M+ I I+ + + + + + +G + ++ Sbjct: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 Query: 61 PSGGKVFVEDTDMYALNETQLAIFRRRQIGLIYQFFNLLPVLTVEENMTLPLLLDNQKVD 120 S + + + + ++ + F P L + Sbjct: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 Query: 121 Q--KQLDGLVHTLHLQHRLNHLPNQLSGGQQQRVSIGRALIGNPAIMLADEPTGNLDSKN 178 + TL + + +Q L + PT Sbjct: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 Query: 179 SNEIIDLLKMLNKTYHQTLIVITHDERIALQADRIISIEDGRI 221 NE ++ + D+ + G Sbjct: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGE 223 >MJ0796 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 18/231 (7%), Positives = 40/231 (17%), Gaps = 8/231 (3%) Query: 5 ILRIEHLSKIYGTGESAVKALDEVSFSVQKGEFXXXXGPSGSGKSTLLHMLGGVDRPSGG 64 + + + + E + + K + T + + Sbjct: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 Query: 65 KVFVEDTDMYALNETQLAIFRRRQIGLIYQFFNLLPVLTVEENMTLPLL------LDNQK 118 K V +R + F T P + Sbjct: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 Query: 119 VDQKQLDGLVHTLHLQHRL-NHLPNQLSGGQQQRVSIGRALIGNPAIMLADEPTGNLDSK 177 + + L + +Q L + PT Sbjct: 121 GEFTMPEHK-FVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLY 179 Query: 178 NSNEIIDLLKMLNKTYHQTLIVITHDERIALQADRIISIEDGRIAKDEVIR 228 NE ++ + D+ + G Sbjct: 180 GLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYE 230 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.138 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,658,375 Number of extensions: 647087 Number of successful extensions: 7860 Number of sequences better than 1.0e-05: 2124 Number of HSP's gapped: 4916 Number of HSP's successfully gapped: 2314 Length of query: 229 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 126 Effective length of database: 26,499,029 Effective search space: 3338877654 Effective search space used: 3338877654 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 114 (48.5 bits)