BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0026.p (144 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2261 [G] COG0524 Sugar kinases, ribokinase family 134 7e-32 BS_kdgK [G] COG0524 Sugar kinases, ribokinase family 133 9e-32 CAC0395 [G] COG0524 Sugar kinases, ribokinase family 117 8e-27 L0021 [G] COG0524 Sugar kinases, ribokinase family 116 1e-26 ML0021 [T] COG1716 FOG: FHA domain 116 1e-26 >PA2261 [G] COG0524 Sugar kinases, ribokinase family Length = 316 Score = 134 bits (336), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 66/131 (50%), Positives = 93/131 (70%), Gaps = 2/131 (1%) Query: 9 VTFGEAMVMFVAGRPGALKDIDTFSRRLAGAEVNVAIGLARLGLSSGWISRLGEDAFGDY 68 + FGE M MFVA +PG L ++ F +R+AGA+ NVAIGLARLG + W+SR+G+D+ G + Sbjct: 7 LCFGETMAMFVAEQPGELDRVEQFGKRIAGADSNVAIGLARLGFAVAWLSRVGDDSLGRF 66 Query: 69 TAEYLAREQVDTHGITRDSRYPTGFQLKSKVLEG-DPQVQYFRKGSAANTLGEADVDASY 127 + L RE +D + D++ PTGFQ+KS+ ++G DP+V+YFR+GSAA+ LG A + Sbjct: 67 VLDSLTREGLDCRFVEVDAQAPTGFQMKSREVDGADPRVEYFRRGSAASRLGLAHIREEM 126 Query: 128 LTGFRHLHMTG 138 L G RHLH TG Sbjct: 127 L-GARHLHATG 136 >BS_kdgK [G] COG0524 Sugar kinases, ribokinase family Length = 324 Score = 133 bits (334), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 70/136 (51%), Positives = 86/136 (63%), Gaps = 1/136 (0%) Query: 4 MLKDSVTFGEAMVMFVAGRPGALKDIDTFSRRLAGAEVNVAIGLARLGLSSGWISRLGED 63 M D+VTFGE+M MF A G L ++ TFS+ LAGAE NVA GLARLG GW+S++G D Sbjct: 1 MKLDAVTFGESMAMFYANEYGGLHEVSTFSKGLAGAESNVACGLARLGFRMGWMSKVGND 60 Query: 64 AFGDYTAEYLAREQVDTHGITRDS-RYPTGFQLKSKVLEGDPQVQYFRKGSAANTLGEAD 122 G + + L +E VD + R PTG LKSKV EGDPQV Y+RK SAA+TL A+ Sbjct: 61 QLGTFILQELKKEGVDVSRVIRSQDENPTGLLLKSKVKEGDPQVTYYRKNSAASTLTTAE 120 Query: 123 VDASYLTGFRHLHMTG 138 Y HLH+TG Sbjct: 121 YPRDYFQCAGHLHVTG 136 >CAC0395 [G] COG0524 Sugar kinases, ribokinase family Length = 315 Score = 117 bits (292), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 59/138 (42%), Positives = 87/138 (63%), Gaps = 4/138 (2%) Query: 5 LKDSVTFGEAMVMFVAGRPGAL----KDIDTFSRRLAGAEVNVAIGLARLGLSSGWISRL 60 + + +T GE + +F A + ++D F + LAGAEVNV++G++RLG S+ +I++L Sbjct: 1 MSEFITIGEPLALFAAEGESEIDKRISEVDHFKKFLAGAEVNVSVGVSRLGHSAQYITKL 60 Query: 61 GEDAFGDYTAEYLAREQVDTHGITRDSRYPTGFQLKSKVLEGDPQVQYFRKGSAANTLGE 120 GED FG++ L E V T I+ ++ TGFQLKSKV EGDP + YFRK SAA Sbjct: 61 GEDPFGEFIRRRLNEENVGTDYISSTNKKFTGFQLKSKVSEGDPSIFYFRKNSAAANFSV 120 Query: 121 ADVDASYLTGFRHLHMTG 138 D++ L G +H+H+TG Sbjct: 121 EDLNKVNLDGVKHVHITG 138 >L0021 [G] COG0524 Sugar kinases, ribokinase family Length = 316 Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 57/131 (43%), Positives = 88/131 (67%), Gaps = 1/131 (0%) Query: 9 VTFGEAMVMFVAGRPGALKDI-DTFSRRLAGAEVNVAIGLARLGLSSGWISRLGEDAFGD 67 +T GE +V+ + D+ + FS+ LAGAE+NVAIGL+RLG ++S++GED+FG+ Sbjct: 5 ITLGEPLVVLASENQDISLDVAEHFSKYLAGAELNVAIGLSRLGHKGIYLSKVGEDSFGN 64 Query: 68 YTAEYLAREQVDTHGITRDSRYPTGFQLKSKVLEGDPQVQYFRKGSAANTLGEADVDASY 127 + E + + +++T +T+D Y TGF LK KV EGDP+V Y+RK SAA L A++ A Sbjct: 65 FIIESVKKAEIETTYLTKDKNYSTGFYLKQKVSEGDPKVDYYRKNSAAANLSIAELKALD 124 Query: 128 LTGFRHLHMTG 138 L+G + H++G Sbjct: 125 LSGIKIAHLSG 135 >ML0021 [T] COG1716 FOG: FHA domain Length = 316 Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 57/131 (43%), Positives = 88/131 (67%), Gaps = 1/131 (0%) Query: 9 VTFGEAMVMFVAGRPGALKDI-DTFSRRLAGAEVNVAIGLARLGLSSGWISRLGEDAFGD 67 +T GE +V+ + D+ + FS+ LAGAE+NVAIGL+RLG ++S++GED+FG+ Sbjct: 5 ITLGEPLVVLASENQDISLDVAEHFSKYLAGAELNVAIGLSRLGHKGIYLSKVGEDSFGN 64 Query: 68 YTAEYLAREQVDTHGITRDSRYPTGFQLKSKVLEGDPQVQYFRKGSAANTLGEADVDASY 127 + E + + +++T +T+D Y TGF LK KV EGDP+V Y+RK SAA L A++ A Sbjct: 65 FIIESVKKAEIETTYLTKDKNYSTGFYLKQKVSEGDPKVDYYRKNSAAANLSIAELKALD 124 Query: 128 LTGFRHLHMTG 138 L+G + H++G Sbjct: 125 LSGIKIAHLSG 135 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 10,696,305 Number of extensions: 424051 Number of successful extensions: 826 Number of sequences better than 1.0e-05: 33 Number of HSP's gapped: 826 Number of HSP's successfully gapped: 33 Length of query: 144 Length of database: 38,378,431 Length adjustment: 96 Effective length of query: 48 Effective length of database: 27,306,367 Effective search space: 1310705616 Effective search space used: 1310705616 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 110 (47.0 bits)