BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0025.p (167 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0395 [G] COG0524 Sugar kinases, ribokinase family 186 1e-47 BS_kdgK [G] COG0524 Sugar kinases, ribokinase family 183 1e-46 L0021 [G] COG0524 Sugar kinases, ribokinase family 163 1e-40 ML0021 [T] COG1716 FOG: FHA domain 163 1e-40 PA2261 [G] COG0524 Sugar kinases, ribokinase family 161 4e-40 >CAC0395 [G] COG0524 Sugar kinases, ribokinase family Length = 315 Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 88/151 (58%), Positives = 116/151 (76%), Gaps = 1/151 (0%) Query: 7 TVSFDPNLRPSLWSSKEEMREVINDLAYRADWVLPGIEEGEFLTGSTDPKEIAEFYLHRG 66 T +FD NLRP LW+SKE+M IND+A+++D +LPGI EG L GS P+EIA+FYL++G Sbjct: 164 TTTFDTNLRPQLWNSKEDMISTINDIAFKSDILLPGINEGLVLMGSDKPEEIADFYLNKG 223 Query: 67 VSLVAVKLGPEGAYFRTPNEEGTVQGFKXXXXXXDTVGAGDGFATGLIEGLLRGLSITEA 126 V LV +KLG +GAY +T +E TV+GFK DTVGAGDGFA G+I +L G+S+ EA Sbjct: 224 VKLVIIKLGSKGAYVKTKDEAYTVEGFK-VKHVVDTVGAGDGFAVGVISAILEGISVKEA 282 Query: 127 VRQGNAIGSIAVQSAGDHDGYPTKEELKAYL 157 VR+GNA+G++AV S GD+DGYPT EEL+ +L Sbjct: 283 VRRGNAVGALAVMSEGDNDGYPTHEELEKFL 313 >BS_kdgK [G] COG0524 Sugar kinases, ribokinase family Length = 324 Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 89/162 (54%), Positives = 115/162 (70%), Gaps = 1/162 (0%) Query: 1 MKGAGRTVSFDPNLRPSLWSSKEEMREVINDLAYRADWVLPGIEEGEFLTGSTDPKEIAE 60 M+ AG+T+SFDPN+RPSLW + M INDLA ADW PGI EGE LTG P+ IA+ Sbjct: 156 MRNAGKTISFDPNVRPSLWPDQATMVHTINDLAGLADWFFPGIAEGELLTGEKTPEGIAD 215 Query: 61 FYLHRGVSLVAVKLGPEGAYFRTPNEEGTVQGFKXXXXXXDTVGAGDGFATGLIEGLLRG 120 +YL +G S VA+KLG EGAYF+T EG ++G + DTVGAGDGFA G+I G+L G Sbjct: 216 YYLKKGASFVAIKLGKEGAYFKTGTSEGFLEGCR-VDRVVDTVGAGDGFAVGVISGILDG 274 Query: 121 LSITEAVRQGNAIGSIAVQSAGDHDGYPTKEELKAYLHYHLT 162 LS +AV++GNAIG++ VQ+ GD DG PT+E+L ++L T Sbjct: 275 LSYKDAVQRGNAIGALQVQAPGDMDGLPTREKLASFLSAQRT 316 >L0021 [G] COG0524 Sugar kinases, ribokinase family Length = 316 Score = 163 bits (412), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 82/150 (54%), Positives = 108/150 (72%), Gaps = 4/150 (2%) Query: 10 FDPNLRPSLWSSKEEMREVINDLAYRADWVLPGIEEGEFLTGSTDPKEIAEFYLHRG--V 67 FDPNLRP LW ++E+M INDLA ++ +LPGI EGE LTGS++P++IA FYL + Sbjct: 164 FDPNLRPVLWDNQEKMIRTINDLAKQSQIILPGINEGEILTGSSEPEKIANFYLEQSPLT 223 Query: 68 SLVAVKLGPEGAYFRTPN-EEGTVQGFKXXXXXXDTVGAGDGFATGLIEGLLRGLSITEA 126 +V VKLG +GA+ + N E+ V GFK DTVGAGDGFA GL LL G ++ EA Sbjct: 224 KIVVVKLGADGAFVKLKNGEQYFVSGFKVAKVV-DTVGAGDGFAVGLESALLEGKTLKEA 282 Query: 127 VRQGNAIGSIAVQSAGDHDGYPTKEELKAY 156 V++ A+G++AVQS+GD +GYPTKEELKA+ Sbjct: 283 VKRACAVGALAVQSSGDSEGYPTKEELKAF 312 >ML0021 [T] COG1716 FOG: FHA domain Length = 316 Score = 163 bits (412), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 82/150 (54%), Positives = 108/150 (72%), Gaps = 4/150 (2%) Query: 10 FDPNLRPSLWSSKEEMREVINDLAYRADWVLPGIEEGEFLTGSTDPKEIAEFYLHRG--V 67 FDPNLRP LW ++E+M INDLA ++ +LPGI EGE LTGS++P++IA FYL + Sbjct: 164 FDPNLRPVLWDNQEKMIRTINDLAKQSQIILPGINEGEILTGSSEPEKIANFYLEQSPLT 223 Query: 68 SLVAVKLGPEGAYFRTPN-EEGTVQGFKXXXXXXDTVGAGDGFATGLIEGLLRGLSITEA 126 +V VKLG +GA+ + N E+ V GFK DTVGAGDGFA GL LL G ++ EA Sbjct: 224 KIVVVKLGADGAFVKLKNGEQYFVSGFKVAKVV-DTVGAGDGFAVGLESALLEGKTLKEA 282 Query: 127 VRQGNAIGSIAVQSAGDHDGYPTKEELKAY 156 V++ A+G++AVQS+GD +GYPTKEELKA+ Sbjct: 283 VKRACAVGALAVQSSGDSEGYPTKEELKAF 312 >PA2261 [G] COG0524 Sugar kinases, ribokinase family Length = 316 Score = 161 bits (408), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 83/153 (54%), Positives = 102/153 (66%), Gaps = 1/153 (0%) Query: 1 MKGAGRTVSFDPNLRPSLWSSKEEMREVINDLAYRADWVLPGIEEGEFLTGSTDPKEIAE 60 M+G G ++SFDPNLRPSLW S+ M IN LA A WVLPG+EEG L+G +P +IA Sbjct: 156 MRGKGASLSFDPNLRPSLWPSERRMIAEINALAAHAHWVLPGLEEGRLLSGWQEPADIAA 215 Query: 61 FYLHRGVSLVAVKLGPEGAYFRTPNEEGTVQGFKXXXXXXDTVGAGDGFATGLIEGLLRG 120 FYL GV VA+KLGP GAY+R + EG V G DTVGAGDGFA G++ LL G Sbjct: 216 FYLDMGVDAVAIKLGPSGAYYRDAHGEGLVPGVP-VATVVDTVGAGDGFAVGVVSALLEG 274 Query: 121 LSITEAVRQGNAIGSIAVQSAGDHDGYPTKEEL 153 L + +AV +GN IGS AVQ GD +G P + +L Sbjct: 275 LPLPDAVARGNWIGSRAVQVRGDMEGLPKRSQL 307 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.315 0.137 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 13,254,906 Number of extensions: 546688 Number of successful extensions: 1207 Number of sequences better than 1.0e-05: 73 Number of HSP's gapped: 1184 Number of HSP's successfully gapped: 73 Length of query: 167 Length of database: 38,378,431 Length adjustment: 99 Effective length of query: 68 Effective length of database: 26,960,365 Effective search space: 1833304820 Effective search space used: 1833304820 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 112 (47.8 bits)