BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0023.p (222 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM2755 [G] COG0269 3-hexulose-6-phosphate synthase and related ... 97 1e-20 MA4504_1 [G] COG0269 3-hexulose-6-phosphate synthase and related... 89 4e-18 AF0861_1 [G] COG0269 3-hexulose-6-phosphate synthase and related... 81 1e-15 sgaH [G] COG0269 3-hexulose-6-phosphate synthase and related pro... 80 3e-15 STM4386 [G] COG0269 3-hexulose-6-phosphate synthase and related ... 79 7e-15 >STM2755 [G] COG0269 3-hexulose-6-phosphate synthase and related proteins Length = 211 Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 63/213 (29%), Positives = 106/213 (49%), Gaps = 35/213 (16%) Query: 1 MNIQLALDRMSIQEAIDMARLTEPYIDWIEVGTSLIKEFGMASVEAMKREFPHKVIVADV 60 M +QLALD +++ EA+ +D IEVGT + G+ +++A+K ++PHK ++AD Sbjct: 1 MKLQLALDELTLPEAMVFMDKVVDDVDIIEVGTPFLIREGVNAIKAIKEKYPHKEVLADA 60 Query: 61 KTFDNAKYEFELCYKAGADVATVMGAAPLVTVDLSMKTARIWDRQVMIDLL--HTMPEEQ 118 K D +E +L + AGAD TV+G ++T+ ++ A+ +QV++D++ +P Sbjct: 61 KIMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARV 120 Query: 119 AALARYWEAVHCLHVSKDQQEGGGSRLAGPGAYGAALDGAPGSAGESPAE---------- 168 L + +H DQQ +AG P + Sbjct: 121 RLLEEAGADMLAVHTGTDQQ----------------------AAGRKPIDDLITMLKVRR 158 Query: 169 -LRIAAAGGITLESLPGLMAMKPEVLIVGSAIT 200 RIA AGGI+ +++ + P+V+IVGSAIT Sbjct: 159 KARIAVAGGISSQTVKDYALLGPDVVIVGSAIT 191 >MA4504_1 [G] COG0269 3-hexulose-6-phosphate synthase and related proteins Length = 241 Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 105/204 (51%), Gaps = 19/204 (9%) Query: 3 IQLALDRMSIQEAIDMAR-LTEPYIDWIEVGTSLIKEFGMASVEAMKREFPHKVIVADVK 61 IQ+ALD + + A+++A+ DWIE+GT LIK GM S+ M++ FP + I+AD+K Sbjct: 32 IQVALDLLELDRAVEIAKEAVAGGADWIEIGTPLIKSEGMDSIRTMRKAFPDRTILADMK 91 Query: 62 TFDNAKYEFELCYKAGADVATVMGAAPLVTVDLSMKTARIWDRQVMIDLLHTMPEEQAAL 121 T D E E+ KAGADVA ++G+A T+ ++++A + +VM DL+ E Sbjct: 92 TVDTGAMEVEMAAKAGADVAIILGSADDSTILDALRSAHKYGVRVMADLISA--PEPIKR 149 Query: 122 ARYWEAVHC----LHVSKDQQEGGGSRLAGPGAYGAALDGAPGSAGESPAELRIAAAGGI 177 A EA+ +HV DQQ + G ++ + +++A AGG+ Sbjct: 150 AVDLEALGVDYINVHVGIDQQ------MVGKDPISILMEIS------EKVSVQLAVAGGL 197 Query: 178 TLESLPGLMAMKPEVLIVGSAITK 201 E + ++IVG IT+ Sbjct: 198 DAEGAAKAVKAGARIVIVGGNITR 221 >AF0861_1 [G] COG0269 3-hexulose-6-phosphate synthase and related proteins Length = 211 Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 13/204 (6%), Positives = 35/204 (17%), Gaps = 19/204 (9%) Query: 3 IQLALDRMSIQEAIDMA-RLTEPYIDWIEVGTSLIKEFGMASVEAMKREFPHKVIVADVK 61 L R+ + + + ++ +A + +P A + Sbjct: 6 RLEILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAML 65 Query: 62 TFDNAKYEFELCYKAGADVATVMGAAPLVTVDLSMKTARIWDRQVMIDLLHTMPEEQAAL 121 + + + + DR + L + A Sbjct: 66 ELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGV--GRKTAN 123 Query: 122 ARYWEAVHC----LHVSKDQQEGGGSRLAGPGAYGAALDGAPGSAGESPAELRIAAAGGI 177 A + + + L Sbjct: 124 VVLNTAFGWPTIAVDTHIFRVCNRTQFA-------PGKNVEQVEEK-----LLKVVPAEF 171 Query: 178 TLESLPGLMAMKPEVLIVGSAITK 201 ++ L+ I Sbjct: 172 KVDCHHWLILHGRYTCIARKPRCG 195 >sgaH [G] COG0269 3-hexulose-6-phosphate synthase and related proteins Length = 216 Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 100/220 (45%), Gaps = 14/220 (6%) Query: 3 IQLALDRMSIQEAIDMARLTEPYIDWIEVGTSLIKEFGMASVEAMKREFPHKVIVADVKT 62 +Q+ALD ++ A + RL +D IEVGT L G+ +V +K +PHK+++AD K Sbjct: 6 LQVALDNQTMDSAYETTRLIAEEVDIIEVGTILCVGEGVRAVRDLKALYPHKIVLADAKI 65 Query: 63 FDNAKYEFELCYKAGADVATVMGAAPLVTVDLSMKTARIWDRQVMIDLLHTMPEEQAALA 122 D K +C++A AD TV+ A + T ++ A+ ++ V I+L EQA Sbjct: 66 ADAGKILSRMCFEANADWVTVICCADINTAKGALDVAKEFNGDVQIELTGYWTWEQAQQW 125 Query: 123 R---YWEAVHCLHVSKDQQEGGGSRLAGPGAYGAALDGAPGSAGESPAELRIAAAGGITL 179 R + V+ H S+D Q G A+G A A S ++ GG+ L Sbjct: 126 RDAGIGQVVY--HRSRDAQAAG-------VAWGEADITAIKRL--SDMGFKVTVTGGLAL 174 Query: 180 ESLPGLMAMKPEVLIVGSAITKXXXXXXXXXXFQDRIREL 219 E LP + V I G +I F+ I EL Sbjct: 175 EDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIAEL 214 >STM4386 [G] COG0269 3-hexulose-6-phosphate synthase and related proteins Length = 211 Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 0/220 (0%), Positives = 0/220 (0%), Gaps = 14/220 (6%) Query: 3 IQLALDRMSIQEAIDMARLTEPYIDWIEVGTSLIKEFGMASVEAMKREFPHKVIVADVKT 62 L R+ L + + L + SV + Sbjct: 6 RLEILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAML 65 Query: 63 FDNAKYEFELCYKAGADVATVMGAAPLVTVDLSMKTARIWDRQVMIDLLHTMPEEQAALA 122 + G + + L + + + ++ L + + A + Sbjct: 66 ELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVV 125 Query: 123 R---YWEAVHCLHVSKDQQEGGGSRLAGPGAYGAALDGAPGSAGESPAELRIAAAGGITL 179 + V A L++ A Sbjct: 126 LNTAFGWPTI--AVDTHIFRVC-------NRTQFAPGKNVEQV--EEKLLKVVPAEFKVD 174 Query: 180 ESLPGLMAMKPEVLIVGSAITKXXXXXXXXXXFQDRIREL 219 Sbjct: 175 214 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.134 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,371,272 Number of extensions: 638793 Number of successful extensions: 2181 Number of sequences better than 1.0e-05: 10 Number of HSP's gapped: 2175 Number of HSP's successfully gapped: 10 Length of query: 222 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 120 Effective length of database: 26,614,363 Effective search space: 3193723560 Effective search space used: 3193723560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 114 (48.5 bits)