BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0579.0020.p
         (194 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ML0316 [K] COG1309 Transcriptional regulator                           50   2e-06

>ML0316 [K] COG1309 Transcriptional regulator
          Length = 215

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 7/155 (4%), Positives = 26/155 (16%), Gaps = 7/155 (4%)

Query: 20  ILDVAARSYFRTGGSFDIRDVAREAGLGYGTVYHYYPNRHLLIEDVLDSGFERCEHVIAE 79
           +L    +               + +   +        ++ ++          +       
Sbjct: 30  VLTNGQKPTTNLSVENLSSVSRQSSVSKFSEPNEKSVSKIMVDLKGAV---TKPNVYQIS 86

Query: 80  WADISGSHPEDRQLLTYCKALLQLWQSDARAYLVYKMAAEH---YAGLPEKDRHHAKRRF 136
             +      ++    T       +  S         +        +     D        
Sbjct: 87  SDERLVDLIKEAGGFTDQADQKSINLSAKLK-DEEVIYVPKIGENSSTENTDSSANSVTS 145

Query: 137 MERLYVPLQAIAQCEDDGVDHMLAVLVGCCGLYYY 171
                     I Q +   +  +  V          
Sbjct: 146 QVSTTTEKININQADLTELQKLTGVGQKKAQDIID 180


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.325    0.139    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 14,809,531
Number of extensions: 595470
Number of successful extensions: 1330
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1341
Number of HSP's successfully gapped: 4
Length of query: 194
Length of database: 38,378,431
Length adjustment: 101
Effective length of query: 93
Effective length of database: 26,729,697
Effective search space: 2485861821
Effective search space used: 2485861821
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 113 (48.1 bits)