BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0018.p (284 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM1028 [R] COG3772 Phage-related lysozyme (muraminidase) 104 1e-22 TM1028 [V] COG1131 ABC-type multidrug transport system, ATPase c... 104 1e-22 XF1602 [V] COG1131 ABC-type multidrug transport system, ATPase c... 92 1e-18 BH0382 [V] COG1131 ABC-type multidrug transport system, ATPase c... 92 1e-18 SPy1286 [V] COG1131 ABC-type multidrug transport system, ATPase ... 91 2e-18 >STM1028 [R] COG3772 Phage-related lysozyme (muraminidase) Length = 150 Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 0/261 (0%), Positives = 0/261 (0%), Gaps = 11/261 (4%) Query: 30 FXXXXGAGKTTLLNTIAGGITADSGTIEVSGK---KLGRGEPPKDFCYVRDQYRHFGSAR 86 G + ++ + + + Q + Sbjct: 34 TIGYGWTHSVDGKPVKPGMMIDEATAERLLNTGLVGYEN-DVSRLVKVKLTQGQFDALVS 92 Query: 87 VMETLQLAASFHPRWDWTYARELLNLFLIDPDKKIRQLSSGTRSLIGNIIGLASRAQLTL 146 Sbjct: 93 152 Query: 147 YDEPVLGLDVLMRERFYKTVLEDYANHPRTILLSTHLIDEIAPIAEKIFILESGSLLLQD 206 Sbjct: 153 - 211 Query: 207 DMEQIRMSAYL---VRG-NSETVFSFMAGKRVLYHEAYGRGTLAAIYEKLDDRDMRQARE 262 Sbjct: 212 - 270 Query: 263 QDISIETLSLQKLFL-YLIEG 282 Sbjct: 271 291 >TM1028 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 293 Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/261 (27%), Positives = 135/261 (51%), Gaps = 11/261 (4%) Query: 30 FXXXXGAGKTTLLNTIAGGITADSGTIEVSGK---KLGRGEPPKDFCYVRDQYRHFGSAR 86 F GAGKTT + + G I DSG E+ GK K G+ E K+ Y+ + + Sbjct: 34 FIGPNGAGKTTTIRLLLGLIFPDSGLAEIFGKDVLKEGK-EIRKNVGYIPGEVSFYPEVT 92 Query: 87 VMETLQLAASFHPRWDWTYARELLNLFLIDPDKKIRQLSSGTRSLIGNIIGLASRAQLTL 146 V E L+ +ASF+ + DW Y +EL +F +D K+I++LS G + + + L R +L + Sbjct: 93 VEEFLRYSASFYEKVDWDYVKELCGVFSLDTKKRIKELSMGNKKKVAIVQALMHRPKLLI 152 Query: 147 YDEPVLGLDVLMRERFYKTVLEDYANHPRTILLSTHLIDEIAPIAEKIFILESGSLLLQD 206 DEP GLD +++ F++ +L++ T+ S+H++ E+ + +++ +++ G ++ + Sbjct: 153 LDEPTNGLDPIVQNTFFE-ILKNEKEKGTTVFFSSHILSEVERLCDRVAMIKDGRIIRVE 211 Query: 207 DMEQIRMSAYL---VRG-NSETVFSFMAGKRVLYHEAYGRGTLAAIYEKLDDRDMRQARE 262 +E ++ Y V+G N E + R+ + + E+L + +R + Sbjct: 212 KVENLKGERYKVVRVKGENLEKLKDLAEVNRLKFENGTAEFLFSGNVERLLE-ILRSLKL 270 Query: 263 QDISIETLSLQKLFL-YLIEG 282 D +E SL+++F+ Y EG Sbjct: 271 SDFWVEEPSLEEIFMSYYREG 291 >XF1602 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 283 Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 93/179 (51%), Gaps = 3/179 (1%) Query: 35 GAGKTTLLNTIAGGITADSGTIEVSGKKLGRGEPP--KDFCYVRDQYRHFGSARVMETLQ 92 GAGKTT L I G +T+ G ++V G R + C++ D RV E + Sbjct: 37 GAGKTTALKAILG-LTSYQGQLQVLGMDPYRQRNALMNEVCFIADVALLPRWLRVNEAID 95 Query: 93 LAASFHPRWDWTYARELLNLFLIDPDKKIRQLSSGTRSLIGNIIGLASRAQLTLYDEPVL 152 + HPR+D T L + ++R+LS G + + +A A+L + DEP L Sbjct: 96 FVSGIHPRFDRTKCEGFLERTQLPRGARVRELSKGMIVQLHLALVMAIDARLLVLDEPTL 155 Query: 153 GLDVLMRERFYKTVLEDYANHPRTILLSTHLIDEIAPIAEKIFILESGSLLLQDDMEQI 211 GLD+L R++FY+ + E Y + RTIL++TH I+EI I + + G L+L D++ + Sbjct: 156 GLDILYRKQFYRHLQEYYFDEQRTILITTHQIEEIEHILTDVMFIRDGHLVLNTDVQNL 214 >BH0382 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 230 Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 96/178 (53%), Gaps = 1/178 (0%) Query: 35 GAGKTTLLNTIAGGITADSGTIEVSGKKLGRGEPPKDFCYVRDQYRHFGSARVMETLQLA 94 G+GK+T L IAG I G + V+G K+ R Y+ + ++ V +T++ Sbjct: 37 GSGKSTTLKLIAGLIYPTKGEVLVNGNKVSR-RIASSVSYLSELDEYYRFYNVEQTIEFY 95 Query: 95 ASFHPRWDWTYARELLNLFLIDPDKKIRQLSSGTRSLIGNIIGLASRAQLTLYDEPVLGL 154 AS P +D A E+L +DP+ K++QLS G R + ++ LA + L DEP+ GL Sbjct: 96 ASQFPDFDPKKAYEILTFMKLDPESKLKQLSKGNRGRLKIVLSLARNVPVILMDEPLSGL 155 Query: 155 DVLMRERFYKTVLEDYANHPRTILLSTHLIDEIAPIAEKIFILESGSLLLQDDMEQIR 212 D ++R+ K ++ + +L++TH + E+ I +++ ++ G ++ ++EQ+R Sbjct: 156 DPMVRQSIVKGLISFIDLERQLVLITTHEVREVENILDEVIAIKEGKIIGHHNVEQLR 213 >SPy1286 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 232 Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 97/178 (54%), Gaps = 2/178 (1%) Query: 35 GAGKTTLLNTIAGGITADSGTIEVSGKKLGRGEPPKDFCYVRDQYRHFGSARVMETLQLA 94 G+GKTTL+ I G + + G I + G + E K Y+ D + R+ + L+ Sbjct: 40 GSGKTTLIKLINGLLQPNKGEIVIDGYRPCV-ETKKIISYLPDTTYLNENMRIKDMLEFF 98 Query: 95 ASFHPRWDWTYARELLNLFLIDPDKKIRQLSSGTRSLIGNIIGLASRAQLTLYDEPVLGL 154 + F+ +D + A LL +DP+ + + LS G + + I+ ++ +A+L + DEP+ G+ Sbjct: 99 SDFYSDFDKSKATSLLRDLELDPEDRFKTLSKGNKEKVQLILVMSRKARLYVLDEPIGGV 158 Query: 155 DVLMRERFYKTVLEDYANHPRTILLSTHLIDEIAPIAEKIFILESGSLLLQDDMEQIR 212 D R+ KT++ Y + ++++STHLI +I PI +++ L+ G L L + + +R Sbjct: 159 DPAARDYILKTIINSYCENA-SVIISTHLISDIEPILDEVIFLKQGRLFLSGNADDLR 215 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.323 0.141 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,050,706 Number of extensions: 741395 Number of successful extensions: 5914 Number of sequences better than 1.0e-05: 380 Number of HSP's gapped: 6015 Number of HSP's successfully gapped: 383 Length of query: 284 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 179 Effective length of database: 26,268,361 Effective search space: 4702036619 Effective search space used: 4702036619 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 115 (48.9 bits)