BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0015.p (160 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value L110431 [V] COG1136 ABC-type antimicrobial peptide transport sys... 202 1e-52 lin1186 [V] COG1136 ABC-type antimicrobial peptide transport sys... 199 1e-51 SPy1257 [V] COG1136 ABC-type antimicrobial peptide transport sys... 197 5e-51 SP1653 [V] COG1136 ABC-type antimicrobial peptide transport syst... 188 3e-48 AF1819 [V] COG1136 ABC-type antimicrobial peptide transport syst... 181 6e-46 >L110431 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 202 bits (515), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 10/157 (6%), Positives = 24/157 (15%) Query: 4 KRLTRYRGEKVGFVFQFYNLIPNLNALENVEFAVEICKDPLDAKDILRKVGLSNRIKNFP 63 R+ ++ P Sbjct: 77 ALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDT 136 Query: 64 SQLSGGEQQRVAIARAVAKNPLLLLCDEPTGALDYMTGKSVLKLLEDLNKETKKCVVLVT 123 + + ++ + + + T VL L + K Sbjct: 137 PLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEV 196 Query: 124 HNSAFALMADKVIRVKSGKIESITINENRQSAEGIEW 160 + V +G + E Sbjct: 197 FYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLG 233 >lin1186 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 199 bits (507), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 10/159 (6%), Positives = 25/159 (15%) Query: 2 NEKRLTRYRGEKVGFVFQFYNLIPNLNALENVEFAVEICKDPLDAKDILRKVGLSNRIKN 61 + R+ ++ P Sbjct: 75 DIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLE 134 Query: 62 FPSQLSGGEQQRVAIARAVAKNPLLLLCDEPTGALDYMTGKSVLKLLEDLNKETKKCVVL 121 + + ++ + + + T VL L + K Sbjct: 135 DTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQ 194 Query: 122 VTHNSAFALMADKVIRVKSGKIESITINENRQSAEGIEW 160 + V +G + E Sbjct: 195 EVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLG 233 >SPy1257 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 197 bits (502), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 10/159 (6%), Positives = 25/159 (15%) Query: 2 NEKRLTRYRGEKVGFVFQFYNLIPNLNALENVEFAVEICKDPLDAKDILRKVGLSNRIKN 61 + R+ ++ P Sbjct: 75 DIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLE 134 Query: 62 FPSQLSGGEQQRVAIARAVAKNPLLLLCDEPTGALDYMTGKSVLKLLEDLNKETKKCVVL 121 + + ++ + + + T VL L + K Sbjct: 135 DTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQ 194 Query: 122 VTHNSAFALMADKVIRVKSGKIESITINENRQSAEGIEW 160 + V +G + E Sbjct: 195 EVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLG 233 >SP1653 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 10/154 (6%), Positives = 24/154 (15%) Query: 7 TRYRGEKVGFVFQFYNLIPNLNALENVEFAVEICKDPLDAKDILRKVGLSNRIKNFPSQL 66 R+ ++ P + Sbjct: 80 YRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLI 139 Query: 67 SGGEQQRVAIARAVAKNPLLLLCDEPTGALDYMTGKSVLKLLEDLNKETKKCVVLVTHNS 126 + ++ + + + T VL L + K + Sbjct: 140 GVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYT 199 Query: 127 AFALMADKVIRVKSGKIESITINENRQSAEGIEW 160 V +G + E Sbjct: 200 TALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLG 233 >AF1819 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 181 bits (458), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 7/159 (4%), Positives = 23/159 (14%) Query: 2 NEKRLTRYRGEKVGFVFQFYNLIPNLNALENVEFAVEICKDPLDAKDILRKVGLSNRIKN 61 +YR + + + + ++ Sbjct: 73 ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVT 132 Query: 62 FPSQLSGGEQQRVAIARAVAKNPLLLLCDEPTGALDYMTGKSVLKLLEDLNKETKKCVVL 121 G Q + + + + + L + Sbjct: 133 LEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDD 192 Query: 122 VTHNSAFALMADKVIRVKSGKIESITINENRQSAEGIEW 160 +A + + E Sbjct: 193 EQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEG 231 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.135 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 10,724,692 Number of extensions: 401825 Number of successful extensions: 4099 Number of sequences better than 1.0e-05: 1742 Number of HSP's gapped: 3297 Number of HSP's successfully gapped: 1829 Length of query: 160 Length of database: 38,378,431 Length adjustment: 98 Effective length of query: 62 Effective length of database: 27,075,699 Effective search space: 1678693338 Effective search space used: 1678693338 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 111 (47.4 bits)