BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0579.0014.p
         (254 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPy1255 [V] COG0577 ABC-type antimicrobial peptide transport sys...    70   4e-12
AF1820_1 [V] COG0577 ABC-type antimicrobial peptide transport sy...    59   8e-09
lin1187 [V] COG0577 ABC-type antimicrobial peptide transport sys...    54   2e-07

>SPy1255 [V] COG0577 ABC-type antimicrobial peptide transport system,
           permease component
          Length = 289

 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 12/150 (8%), Positives = 29/150 (19%), Gaps = 9/150 (6%)

Query: 4   KLLFK-LLRDIKQSAGQFLSFVLVVAVGAFFYTGLAALSNNLGTYTEAYFKEYNLSDLNI 62
             + + LL  ++    Q LS   V A   +    L  +  ++  +    +        + 
Sbjct: 4   AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSA 63

Query: 63  YYS-QLTQKEIAELSKVEGIRKLEGRYTFDATESFDGYRAALKIHSIPENNEINRPAMTK 121
                  +  +    +       +                AL   S              
Sbjct: 64  VALRLTARPILDIALQYRFDS-QQTFTRAFK--KQFAQTPALYRRSPEW--SAFGIRPPL 118

Query: 122 GSLPSTKDGIVLDSSYAKEHHYSVGDKIII 151
                T       +            +   
Sbjct: 119 RLGEFTMPEHKFVTLEDT--PLIGVTQSYS 146


>AF1820_1 [V] COG0577 ABC-type antimicrobial peptide transport system,
           permease component
          Length = 289

 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 10/115 (8%), Positives = 22/115 (19%)

Query: 8   KLLRDIKQSAGQFLSFVLVVAVGAFFYTGLAALSNNLGTYTEAYFKEYNLSDLNIYYSQL 67
              +           F  V       Y     LS +            +++    + SQ 
Sbjct: 27  VAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQ 86

Query: 68  TQKEIAELSKVEGIRKLEGRYTFDATESFDGYRAALKIHSIPENNEINRPAMTKG 122
           T     +    +          + A       R         +   +    +   
Sbjct: 87  TFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGV 141


>lin1187 [V] COG0577 ABC-type antimicrobial peptide transport system,
           permease component
          Length = 289

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 11/148 (7%), Positives = 31/148 (20%), Gaps = 7/148 (4%)

Query: 11  RDIKQSAGQFLSFVLVVAVGAFFYTGLAALSNNLGTYTEAYFKEYNLSDLNI---YYSQL 67
             ++    Q LS   V A   +    L  +  ++  +    +        +      +  
Sbjct: 12  IWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTAR 71

Query: 68  TQKEIAELSKVEGIRKLEGRYTFDATESFDGYRAALKIHSIPENNEINRPAMTKGSLPST 127
              +     +     +      F    +        +         I  P          
Sbjct: 72  PILD--IALQYRFDSQQTFTRAFKKQFAQTPA--LYRRSPEWSAFGIRPPLRLGEFTMPE 127

Query: 128 KDGIVLDSSYAKEHHYSVGDKIIIRVNN 155
              + L+ +       S    +    + 
Sbjct: 128 HKFVTLEDTPLIGVTQSYSCSLEQISDF 155


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.316    0.134    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 17,960,228
Number of extensions: 788232
Number of successful extensions: 1543
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1545
Number of HSP's successfully gapped: 5
Length of query: 254
Length of database: 38,378,431
Length adjustment: 104
Effective length of query: 150
Effective length of database: 26,383,695
Effective search space: 3957554250
Effective search space used: 3957554250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)