BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0013.p (522 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin1187 [V] COG0577 ABC-type antimicrobial peptide transport sys... 176 9e-44 L111162 [V] COG0577 ABC-type antimicrobial peptide transport sys... 174 3e-43 SP1652 [V] COG0577 ABC-type antimicrobial peptide transport syst... 147 3e-35 SPy1255 [V] COG0577 ABC-type antimicrobial peptide transport sys... 135 1e-31 AF1820_2 [V] COG0577 ABC-type antimicrobial peptide transport sy... 93 1e-18 >lin1187 [V] COG0577 ABC-type antimicrobial peptide transport system, permease component Length = 289 Score = 176 bits (446), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 0/526 (0%), Positives = 0/526 (0%), Gaps = 38/526 (7%) Query: 21 MSRIIDSQRNQIGIMKALGIKNNSIMLHYMGYPVLIGIVGALLGYVISVAVFVPLISVSN 80 Sbjct: 625 684 Query: 81 ARSYSLPGIQFALSFDLILPPVIVSSLFGMLACYLSGRNLLKERAAQAMRPKPSKSMKAI 140 Sbjct: 685 744 Query: 141 LVERIPGLWNRIPFDYKLILRNIFLNKKKVLASSVGVMVSTVLLITAFGTQASLQKVAG- 199 Sbjct: 745 804 Query: 200 QFEQVYTYDLKV--DFK----SGETLDEITLPAGVKSHHVLSAMPIELKNENQTTEKASL 253 Sbjct: 805 864 Query: 254 LVTEKDNNLIHFYDEKDNPLY----LDHNGVLVPKSYADHYGIAKGDTVQIAFTGSGMGN 309 Sbjct: 865 ---- 920 Query: 310 KVVEMKVLNISTQYSSPSFYITPEYLT-------SFG---LTYKPTSLLVETDPS---AD 356 Sbjct: 921 980 Query: 357 QAGIRSYFEQDHRVDAIYDKADLRKEARYILQQNSFVFIMFIICAVILSFGAIYTISSIN 416 Sbjct: 981 ---------- 1030 Query: 417 IYERNRELATLKVLGYYKNKINRLIFFENIMITTLAVLAALPVCGYVYKMVVEALSSTHQ 476 Sbjct: 1031 1090 Query: 477 QIPDQLNIWFVLMSALVAFALTLLANLPLRRKVNRINMIESLKGLE 522 Sbjct: 1091 1136 >L111162 [V] COG0577 ABC-type antimicrobial peptide transport system, permease component Length = 289 Score = 174 bits (442), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 0/545 (0%), Positives = 0/545 (0%), Gaps = 35/545 (6%) Query: 1 MSKVIPXXXXXXXXXXXXXXMSRIIDSQRNQIGIMKALGIKNNSIMLHYMGYPVLIGIVG 60 Sbjct: 364 423 Query: 61 ALLGYVISVAVFVPLISVSNA--RSYSLPGIQFALSFDLILPPVIVSSLFGMLACYLSGR 118 Sbjct: 424 -- 481 Query: 119 NLLKERAAQAMRPKPSKSMKAILVERIPGLWNRIPFDYKLILRNIFLNKKKVLASSVGVM 178 Sbjct: 482 541 Query: 179 VSTVLLITAFGTQASLQKVAG-QFEQVYTYDL------KVDFKSGETLDEITLPAGVKSH 231 Sbjct: 542 ----- 596 Query: 232 HVLSAMPIELKNENQTT------EKASLLVTEKDNNLIHFYDEKD----NPLYLDHNGVL 281 Sbjct: 597 656 Query: 282 VPKSYADHYGIAKGDTVQIAFTGSGMGNKVVEMKVLNISTQYSSPSFYITPE-YLTSFGL 340 Sbjct: 657 ---- 712 Query: 341 TYKPTSLLVETDPSADQ--AGIRSYFEQDHRVDAIYDKADLRKEARYILQQNSFVFIMFI 398 Sbjct: 713 772 Query: 399 ICAVILSFGAIYTISSINIYERNRELATLKVLGYYKNKINRLIFFENIMITTLAVLAALP 458 Sbjct: 773 832 Query: 459 VCGYVYKMVVEALSSTHQQIPDQLNIWF-VLMSALVAFALTLLANLPLRRKVNRINMIES 517 Sbjct: 833 - 891 Query: 518 LKGLE 522 Sbjct: 892 896 >SP1652 [V] COG0577 ABC-type antimicrobial peptide transport system, permease component Length = 289 Score = 147 bits (372), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 0/525 (0%), Positives = 0/525 (0%), Gaps = 44/525 (8%) Query: 21 MSRIIDSQRNQIGIMKALGIKNNSIMLHYMGYPVLIGIVGALLGYVISVAVFVPLIS--V 78 Sbjct: 421 480 Query: 79 SNARSYSLPGIQFALSFDLILPPVIVSSLFGMLACYLSGRNLLKERAAQAMRPKPSKSMK 138 Sbjct: 481 -- 538 Query: 139 AILVERIPGLWNRIPFDYKLILRNIFLNKKKVLASSVGVMVSTVLLITAFGTQASLQKVA 198 Sbjct: 539 598 Query: 199 GQFEQVYTYD--LKVDFKSGETLDEITLPAGVKSHHVLSAMPIELK------NENQTTEK 250 Sbjct: 599 658 Query: 251 ASLLVTEKDN--NLIHFYDEKDNPLYLDHNGVLVPKSYADHYGIAKGDTVQIAFTGSGMG 308 Sbjct: 659 ---------- 708 Query: 309 NKVVEMKVLNISTQYSSPSFYIT-PEYLTSFGLTYKPTSLLVE-TDPSA----DQAGIRS 362 Sbjct: 709 --- 765 Query: 363 YFEQDHRVDAIYDKADLRKEARYILQQNSFVFIMFIICAVILSFGAIYTISSINIYERNR 422 Sbjct: 766 - 824 Query: 423 ELATLKVLGYYKNKINRLIFFENIMITTLAVLAALPVCGYVYKMVVEALSSTHQQIPDQL 482 Sbjct: 825 884 Query: 483 NIW--FVLMSALVAFALTLLA---NLPLRRKVNRINMIESLKGLE 522 Sbjct: 885 ----- 924 >SPy1255 [V] COG0577 ABC-type antimicrobial peptide transport system, permease component Length = 289 Score = 135 bits (341), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 0/530 (0%), Positives = 0/530 (0%), Gaps = 46/530 (8%) Query: 21 MSRIIDSQRNQIGIMKALGIKNNSIMLHYMGYPVLIGIVGALLGYVISVAVFVPLIS--- 77 Sbjct: 367 426 Query: 78 -----VSNARSYSL---PGIQFALSFDLILPPVIVSSLFGMLACYLSGRNLLKERAAQAM 129 Sbjct: 427 ----------- 475 Query: 130 RPKPSKSMKAILVERIPGLWNRIPFDYKLILRNIFLNKKKVLASSVGVMVSTVLLITAFG 189 Sbjct: 476 535 Query: 190 TQASLQKVA-GQFEQVYTYD-LKVDFKSGETLDEITLPAGVKSHHVLS---------AMP 238 Sbjct: 536 595 Query: 239 IELKNENQTTEKASLLVTEKDN--NLIHFYDEKDNPLYLDHNGVLVPKSYADHYGIAKGD 296 Sbjct: 596 -- 653 Query: 297 TVQIAFTG-SGMGNKVVEMKVLNISTQYSSPSFYITPEYLTSF--GLTYKPTSLL-VETD 352 Sbjct: 654 ----- 708 Query: 353 PSADQAGIRSYFEQDHRVDAIYDKADLRKEARYILQQNSFVFIMFIICAVILSFGAIYTI 412 Sbjct: 709 768 Query: 413 SSINIYERNRELATLKVLGYYKNKINRLIFFENIMITTLAVLAALPVCGYVYKMVVEALS 472 Sbjct: 769 828 Query: 473 STHQQIPDQLNIWFVLMSALVAFALTLLANLPLRRKVNRINMIESLKGLE 522 Sbjct: 829 878 >AF1820_2 [V] COG0577 ABC-type antimicrobial peptide transport system, permease component Length = 289 Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 0/393 (0%), Positives = 0/393 (0%), Gaps = 30/393 (7%) Query: 141 LVERIPGLWNRI---PFDYKLILRNIFLNKKKVLASSVGVMVSTVLLITAFGTQASLQKV 197 L+ L + K L + + + + A Sbjct: 11 LIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTA 70 Query: 198 AG-QFEQVYTYDLKVD---FKSGETLDEITLPAGVKSHHVLSAMPIELKNENQTTEKASL 253 + + + + L+ T Sbjct: 71 RPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTM--PEH 128 Query: 254 LVTEKDNNLIHFYDEKDNPLYLDHNGVLVPKSYADHYGIAKGDTVQIAFTGSGMGNKVVE 313 ++ + + + L+ + + G+ I N+ Sbjct: 129 KFVTLEDTPLIGVTQSYSCS-LEQISDFRHEMRYQFWHDFLGNAPTI-PPVLYGLNETRP 186 Query: 314 ----MKVLNISTQYSSPSFYITPEYLTSFGLTYKPTSLLVETDPSADQAGIRSYFEQDHR 369 + T ++ + +E Sbjct: 187 SQDKDDEQEVFYT--------TALAQDQADGYVLTGHPVML----QGGEYVMFTYEGLGT 234 Query: 370 VDAIYDKADLRKEARYILQQNSF--VFIMF-IICAVILSFGAIYTISSINIYERNRELAT 426 + + + Sbjct: 235 GVQEFILTVYGTCMPMLNLTRRKGQDIERYY 294 Query: 427 LKVLGYYKNKINRLIFFENIMITTLAVLAALPVCGYVYKMVVEALSSTHQQIPDQLNIWF 486 Sbjct: 295 354 Query: 487 VLMSALVAFALTLLANLPLRRKVNRINMIESLK 519 Sbjct: 355 387 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.322 0.138 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 34,347,585 Number of extensions: 1434609 Number of successful extensions: 13754 Number of sequences better than 1.0e-05: 10 Number of HSP's gapped: 13747 Number of HSP's successfully gapped: 10 Length of query: 522 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 411 Effective length of database: 25,576,357 Effective search space: 10511882727 Effective search space used: 10511882727 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 118 (50.1 bits)