BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0011.p (204 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0820 [TK] COG0745 Response regulators consisting of a CheY-lik... 140 2e-33 CAC0289 [TK] COG0745 Response regulators consisting of a CheY-li... 135 6e-32 BS_ykoG [TK] COG0745 Response regulators consisting of a CheY-li... 125 7e-29 SP2082 [TK] COG0745 Response regulators consisting of a CheY-lik... 124 9e-29 SP1227 [TK] COG0745 Response regulators consisting of a CheY-lik... 122 4e-28 >BH0820 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 234 Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 82/209 (39%), Positives = 118/209 (56%), Gaps = 8/209 (3%) Query: 1 LEQRGYSVQWLLSGEGAEK--EVNQHEIVILDIMLPGLDGFTVGKRLKKAAPAVPILLLS 58 L+ GY V GE A + E N +++V+LD+MLP +G + ++ + VP+L++S Sbjct: 23 LQLEGYHVCCAFDGEEATRLFEQNTYDLVLLDLMLPRRNGIDCLQWIRTKS-VVPVLIMS 81 Query: 59 ARTSVDDKVDGLQF-ADDYLTKPFHSDELVARLEVXXXXXXXXXXXXXXXXNHI----EV 113 A+ S DK GL F ADDY+TKPF EL AR++ N E+ Sbjct: 82 AKDSDVDKALGLGFGADDYITKPFSMIELTARVKAAIRRTVNYAQASQSAENERIKIHEL 141 Query: 114 DPEAQMVFDKRTGEEIILTGKQHQILMYFLRHPNKVLPKEQIYEAIWEEAYITGDKTLMV 173 E K+ GEEI LT K+ QIL F+ HP KV KEQ+Y ++W + Y + + + V Sbjct: 142 VVELSSFTVKKKGEEIKLTAKEFQILKLFVTHPKKVFTKEQLYRSVWNDDYYSDENVINV 201 Query: 174 HIRRLRQKLERNPDSPEIIETLKGIGYRV 202 HIRRLR+K+E P P+ I+T+ GIGYR+ Sbjct: 202 HIRRLREKIEDTPSKPQYIKTIWGIGYRM 230 >CAC0289 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 235 Score = 135 bits (339), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 75/189 (39%), Positives = 113/189 (59%), Gaps = 9/189 (4%) Query: 22 NQHEIVILDIMLPGLDGFTVGKRLKKAAPAVPILLLSARTSVDDKVDGLQF-ADDYLTKP 80 N EI+ILDIMLP +DGF V ++++ + +VPI+ LSA++ DK+ GL ADDY+TKP Sbjct: 50 NAPEIIILDIMLPDIDGFEVFRQIRNFS-SVPIMFLSAKSEDTDKIIGLGLGADDYITKP 108 Query: 81 FHSDELVARLEVXXXXXXXXXXXXXXXXN-----HIEVDPEAQMVFDKRTGEEIILTGKQ 135 F E+ R++ N H +D E + + + IL K+ Sbjct: 109 FSPKEVALRVKAHLKRIEMVKKSLTNRENIIKTEHFTIDFEKGEII--KNDKSTILRAKE 166 Query: 136 HQILMYFLRHPNKVLPKEQIYEAIWEEAYITGDKTLMVHIRRLRQKLERNPDSPEIIETL 195 +L Y + + N +L KE+I A+WE+ Y+ D T+MVHIR+LRQKLE +P +P+ I T+ Sbjct: 167 LLLLKYLVENKNIILSKEKIVNAVWEDDYVGYDNTIMVHIRKLRQKLEDDPSNPKYILTV 226 Query: 196 KGIGYRVKL 204 KG+GY++KL Sbjct: 227 KGLGYKLKL 235 >BS_ykoG [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 228 Score = 125 bits (313), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 118/206 (57%), Gaps = 4/206 (1%) Query: 1 LEQRGYSVQWLLSG-EGAEKEV-NQHEIVILDIMLPGLDGFTVGKRLKKAAPAVPILLLS 58 LE GYSV +G EG + + +V+LD+MLPGL G V +RL+K P++LL+ Sbjct: 23 LEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLEVLRRLRKTDSQTPVILLT 82 Query: 59 ARTSVDDKVDGLQF-ADDYLTKPFHSDELVARLEVXXXXXXXXXXXXXXXXNHIEVDPEA 117 AR S+ DKV GL A+DY+TKPF +EL+AR+ + ++ Sbjct: 83 ARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGTKTEDIGTFLTYDDLRVNE 142 Query: 118 QMVFDKRTGEEIILTGKQHQILMYFLRHPNKVLPKEQIYEAIWEEAYITGDKTLMVHIRR 177 + +R +E+ LT ++ +L+Y L+HP +VL +EQI ++W YI + V+IR Sbjct: 143 KTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSSVWGFDYIGDTNVVDVYIRY 202 Query: 178 LRQKLERNPDSPEIIETLKGIGYRVK 203 +R+KL+ P ++I T++G+GY +K Sbjct: 203 IRKKLD-YPYEKQLIHTIRGVGYAIK 227 >SP2082 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 235 Score = 124 bits (311), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 77/216 (35%), Positives = 119/216 (55%), Gaps = 17/216 (7%) Query: 1 LEQRGYSVQWLLSGEGAEK--EVNQHEIVILDIMLPGLDGFTVGKRLKKAAPAVPILLLS 58 L + G+S Q + +G A E + ++LDIMLP LDG V KRL+ PI+++S Sbjct: 22 LSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGMEVCKRLRAKGVKTPIMMVS 81 Query: 59 ARTSVDDKVDGLQF-ADDYLTKPFHSDELVARLEVXXXXX--------XXXXXXXXXXXN 109 A++ DKV L+ ADDYLTKPF EL+AR++ Sbjct: 82 AKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKGEQEGDDSDNIADDSWLFG 141 Query: 110 HIEVDPEAQMVFDKRTGEEIILTGKQHQILMYFLRHPNKVLPKEQIYEAIWEEAYITGDK 169 ++V PE V+ + + + LT K+ ++L+Y ++HPN L +E++ E IW Y G + Sbjct: 142 TLKVYPERHEVY--KANKLLSLTPKEFELLLYLMKHPNMTLTRERLLERIW--GYDFGQE 197 Query: 170 TLM--VHIRRLRQKLERNPDSPEIIETLKGIGYRVK 203 T + VHI +LR+K+E NP +P+ I T++G GY+ K Sbjct: 198 TRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKFK 233 >SP1227 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 234 Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 76/214 (35%), Positives = 121/214 (56%), Gaps = 14/214 (6%) Query: 1 LEQRGYSVQWLLSGEGA--EKEVNQHEIVILDIMLPGLDGFTVGKRLKKAAPAVPILLLS 58 + + GY V +G A + E Q +I+ILD+MLP +DG V K ++K + +VPIL+LS Sbjct: 21 MTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTS-SVPILMLS 79 Query: 59 ARTSVDDKVDGLQF-ADDYLTKPFHSDELVARLEVXXXXXXXXXXXXXXXXNH------- 110 A+ S DKV GL+ ADDY+TKPF + EL AR++ + Sbjct: 80 AKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQPMPVDGQEADSKPQPIQIG 139 Query: 111 -IEVDPEAQMVFDKRTGEEIILTGKQHQILMYFLRHPNKVLPKEQIYEAIWEEAYITGDK 169 +E+ P+A + K+ GEE+ LT ++ ++L + H +V+ +E + E +W Y + Sbjct: 140 DLEIVPDAYVA--KKYGEELDLTHREFELLYHLASHTGQVITREHLLETVWGYDYFGDVR 197 Query: 170 TLMVHIRRLRQKLERNPDSPEIIETLKGIGYRVK 203 T+ V +RRLR+K+E P PE I T +G+GY ++ Sbjct: 198 TVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMR 231 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.139 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 14,931,396 Number of extensions: 557827 Number of successful extensions: 2119 Number of sequences better than 1.0e-05: 270 Number of HSP's gapped: 1688 Number of HSP's successfully gapped: 280 Length of query: 204 Length of database: 38,378,431 Length adjustment: 101 Effective length of query: 103 Effective length of database: 26,729,697 Effective search space: 2753158791 Effective search space used: 2753158791 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 113 (48.1 bits)