BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0579.0007.p (240 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Cgl2690 [V] COG1131 ABC-type multidrug transport system, ATPase ... 251 9e-67 lin0750 [V] COG1131 ABC-type multidrug transport system, ATPase ... 175 7e-44 BS_yhcH [V] COG1131 ABC-type multidrug transport system, ATPase ... 165 6e-41 CAC0147 [V] COG1131 ABC-type multidrug transport system, ATPase ... 161 8e-40 CAC0138 [V] COG1131 ABC-type multidrug transport system, ATPase ... 160 1e-39 >Cgl2690 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 310 Score = 251 bits (640), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 119/219 (54%), Positives = 157/219 (71%) Query: 4 LLTINNLVKHRGNQEILSGISFKARPGKVTGFLGPNGAGKSSTLRILLGLDHATSGSALI 63 ++ + L K G + +SF+ +PG VTGFLGPNGAGKS+T+R++LGLD+ T+G A I Sbjct: 1 MINVEGLTKQYGQVRAVDDLSFEVKPGIVTGFLGPNGAGKSTTMRLILGLDNPTAGHATI 60 Query: 64 NGKPFAELHNPLATVGAALDGSGAHRMRTGRAHLRWIARAAGLPRSRVEEVLEIAGLTNA 123 G+P+ L NPL VGA LD H RT HL+WIARA GL RV+EVL + GLT Sbjct: 61 EGQPYRSLKNPLTKVGALLDAKATHPNRTAENHLKWIARANGLSTKRVDEVLTLVGLTGV 120 Query: 124 AGKRVGSYSLGMGRRLGMAAALLGDPQILILDEPVNGLDPEGIRWIRTFLRKRAESGNTV 183 A K+ G +SLGMG+RLG+AAALLGDP+ LILDEPVNGLDPEGI W+RT L+ A+ G TV Sbjct: 121 ASKKTGGFSLGMGQRLGLAAALLGDPEYLILDEPVNGLDPEGIHWVRTLLQNIAKQGRTV 180 Query: 184 LLSSHLMGELAETVDDVVIIKHGTIVADGTLEEVIGNHS 222 L+SSHL+ E+A+T + +++I G +VAD + E + +HS Sbjct: 181 LVSSHLLSEMAQTAEHLIVIGRGKLVADMPMHEFVRSHS 219 >lin0750 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 301 Score = 175 bits (443), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 99/246 (40%), Positives = 148/246 (60%), Gaps = 12/246 (4%) Query: 5 LTINNLVKHRGNQEILSGISFKARPGKVTGFLGPNGAGKSSTLRILLGLDHATSGSALIN 64 L + NL K +EI+ GISF+ RPG+V GFLGPNGAGK++T+R+++GL TSG+ LI Sbjct: 6 LQVTNLHKKIRKREIIKGISFEVRPGEVFGFLGPNGAGKTTTIRMIVGLIKPTSGTILIG 65 Query: 65 GKPFAE-LHNPLATVGAALDGSGAHRMRTGRAHLRWIARA-AGLPRSRVEEVLEIAGLTN 122 GK + + +G+ ++ + TG+ +L + AR + + R++EV E+ GL Sbjct: 66 GKDIRKNFTEAMRGLGSIVENPEFYTFLTGQENLAYFARMDPSIKKERIQEVTELVGLEK 125 Query: 123 AAGKRVGSYSLGMGRRLGMAAALLGDPQILILDEPVNGLDPEGIRWIRTFLRKRAES-GN 181 RV +YSLGM +RLG+A ALL P++LILDEP NGLDP GI +R F+R A + G Sbjct: 126 RINDRVSTYSLGMRQRLGIAQALLSSPKLLILDEPTNGLDPSGIHEMRDFIRALARNEGI 185 Query: 182 TVLLSSHLMGELAETVDDVVIIKHGTIVADGTLEEVIGNHSTLE---------EAFFALT 232 +VL+SSHL+ E+ D V I+ GTI+ + ++ + + L +AF A Sbjct: 186 SVLVSSHLLSEIELLCDRVAIMTDGTIIKTDQVSHLLSSRAQLRWLATPFEQAKAFLASV 245 Query: 233 SEIAGD 238 +E+ D Sbjct: 246 TEVEVD 251 >BS_yhcH [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 154 Score = 165 bits (418), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 0/209 (0%), Positives = 0/209 (0%), Gaps = 3/209 (1%) Query: 4 LLTINNLVKHRGNQEILSGISFKARPGKVTGFLGPNGAGKSSTLRILLGLDHATSGSALI 63 + + A + G + + ++ + Sbjct: 4 GEVQSLPSAGLHPALQDALTLALAARPQEKAPGRYELQGDNIFMNVMTFNTQSPVEKKAE 63 Query: 64 NGKPFA-ELHNPLATVGAALDGSGAHRMRTGRAHLRWIAR-AAGLPRSRVEEVLEIAGLT 121 + + +G R H + + + + Sbjct: 64 LHEQYIDIQLLLNGEERILFGMAGTARQCEEFHHEDDYQLCSTIDNEQAIILKPGMFAVF 123 Query: 122 NAAGKRVGSYSLGMGRRLGMAAALLGDPQILILDEPVNGLDPEGIRWIRTFLRKRA-ESG 180 Sbjct: 124 183 Query: 181 NTVLLSSHLMGELAETVDDVVIIKHGTIV 209 Sbjct: 184 212 >CAC0147 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 318 Score = 161 bits (408), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 89/228 (39%), Positives = 137/228 (60%), Gaps = 5/228 (2%) Query: 4 LLTINNLVKHRGNQEILSGISFKARPGKVTGFLGPNGAGKSSTLRILLGLDHATSGSALI 63 +L + +L K GN+EI+ GISF + G++ GFLG NGAGK++T+++L+GL GS +I Sbjct: 4 VLEVTDLYKKLGNKEIIKGISFSIKEGEILGFLGRNGAGKTTTIKMLVGLITPDKGSVMI 63 Query: 64 NGKPFA-ELHNPLATVGAALDGSGAHRMRTGRAHLRWIAR-AAGLPRSRVEEVLEIAGLT 121 +G E L+ VGA ++ + TGR +L +AR + + +E++ GL+ Sbjct: 64 SGHDITKEAEEALSCVGAVVENPELYSYLTGRQNLEQVARFYKDITKEDIEKIGNTVGLS 123 Query: 122 NAAGKRVGSYSLGMGRRLGMAAALLGDPQILILDEPVNGLDPEGIRWIRTFLRKRA-ESG 180 ++V YSLGM +RLG+A AL+ P++LILDEP NGLDP GI R L+K+A E+ Sbjct: 124 GRLDEKVKKYSLGMKQRLGLAEALISKPKLLILDEPTNGLDPTGIIEFRNLLKKQAKENK 183 Query: 181 NTVLLSSHLMGELAETVDDVVIIKHGTIVADGTLEEVIGNHSTLEEAF 228 + +SSH++ E+ + D V I G I + TL+ +H T E+F Sbjct: 184 MAIFVSSHILSEIEQLCDRVAFIDGGIIKSFETLKGTNKDHKT--ESF 229 >CAC0138 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 312 Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 88/208 (42%), Positives = 124/208 (59%), Gaps = 3/208 (1%) Query: 4 LLTINNLVKHRGNQEILSGISFKARPGKVTGFLGPNGAGKSSTLRILLGLDHATSGSALI 63 +L + ++ KH G +EI+ GISF G++ GFLGPNGAGK++T+R+L+GL SGS I Sbjct: 4 VLEVKDVKKHIGKREIIKGISFSVEEGQIFGFLGPNGAGKTTTIRMLVGLIKPNSGSIKI 63 Query: 64 NGKPFA-ELHNPLATVGAALDGSGAHRMRTGRAHLRWIARAAG-LPRSRVEEVLEIAGLT 121 G E L+ VG ++ + TGR +L A+ G + + R++EV EI GL Sbjct: 64 MGHDIQKEKEKALSNVGCIVENPDMYGFLTGRENLIQYAKMYGSVSKERIDEVAEIIGLK 123 Query: 122 NAAGKRVGSYSLGMGRRLGMAAALLGDPQILILDEPVNGLDPEGIRWIRTFLRKRAESGN 181 + +V YSLGM +RLG+ ALL P++LILDEP NGLDP GI R +R AE Sbjct: 124 DRINDKVKKYSLGMKQRLGLGQALLVRPKLLILDEPTNGLDPVGIMDFRRIVRLMAEENK 183 Query: 182 T-VLLSSHLMGELAETVDDVVIIKHGTI 208 + V +SSH++ E+ + D V I G I Sbjct: 184 SAVFISSHILAEIQQVCDTVAFINGGEI 211 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,107,926 Number of extensions: 850843 Number of successful extensions: 7791 Number of sequences better than 1.0e-05: 1754 Number of HSP's gapped: 6443 Number of HSP's successfully gapped: 1893 Length of query: 240 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 137 Effective length of database: 26,499,029 Effective search space: 3630366973 Effective search space used: 3630366973 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 114 (48.5 bits)