BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0578.0014.p (220 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPy0773 [V] COG1136 ABC-type antimicrobial peptide transport sys... 212 4e-55 L52030 [V] COG1136 ABC-type antimicrobial peptide transport syst... 210 2e-54 L132038 [V] COG1136 ABC-type antimicrobial peptide transport sys... 207 1e-53 SA0297 [V] COG1136 ABC-type antimicrobial peptide transport syst... 195 5e-50 SA2149 [V] COG1136 ABC-type antimicrobial peptide transport syst... 186 2e-47 >SPy0773 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 212 bits (539), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 6/220 (2%), Positives = 41/220 (18%), Gaps = 3/220 (1%) Query: 1 VMKQVTQTYGDGDGAMTVLNQLDLTVNEGEFVAVLGPSGSGKSTFLSAAGALLTPTSGEI 60 + + + +G + + + A + + Sbjct: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 Query: 61 FIDGEPLSHKNKSELTELRLRKIGFMFQSAQLLPYLKVEEQLLYVAKLAKLSTKEAKERS 120 + + + ++ Q + + + Sbjct: 65 ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFG--IRPP-LRLG 121 Query: 121 SYLLKRLEVWERRNHYPEKLSGGQKQRVAIARAWMNKPAILFADEPTASLDFNRGCEVVR 180 + + + + ++ + + ++ F + + Sbjct: 122 EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 Query: 181 MIADEVTSEGKAAVMVTHDERMLEWCDRVYHLQDGVLVEQ 220 + + + D V+++ Sbjct: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQG 221 >L52030 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 11/221 (4%), Positives = 31/221 (14%), Gaps = 12/221 (5%) Query: 2 MKQVTQTYGDGDGAMTVLNQLDLTVNEGEFVAVLGPSGSGKSTFLSAAGALLTPTSGEIF 61 ++ + L+ + ++ + A S Sbjct: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 Query: 62 IDG---EPLSHKNKSELTELRLRKIGFMFQSAQLLPYLKVEEQLLYVAKLA--KLSTKEA 116 + F+ + A L E Sbjct: 67 RLTARPILDIALQYR---FDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEF 123 Query: 117 KERSSYLLKRLEVWERRNHYPEKLSGGQKQRVAIARAWMNKPAILFADEPTASLDFNRGC 176 + E S + A Sbjct: 124 TM----PEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLY 179 Query: 177 EVVRMIADEVTSEGKAAVMVTHDERMLEWCDRVYHLQDGVL 217 + + + + T + + + Sbjct: 180 GLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQ 220 >L132038 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 207 bits (526), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 6/221 (2%), Positives = 41/221 (18%), Gaps = 7/221 (3%) Query: 2 MKQVTQTYGDGDGAMTVLNQLDLTVNEGEFVAVLGPSGSGKSTFLSAAGALLTPTSGEIF 61 + + + +G + + + A + + Sbjct: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 Query: 62 IDGEPLSHKNKSELTELRLRKIGFMFQSAQLLPYLKVEEQLLYVAKLAKLSTKEAKERSS 121 + + + ++ Q + + + Sbjct: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGI-----RPPLRL 120 Query: 122 --YLLKRLEVWERRNHYPEKLSGGQKQRVAIARAWMNKPAILFADEPTASLDFNRGCEVV 179 + + + + ++ + + ++ F + + Sbjct: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 Query: 180 RMIADEVTSEGKAAVMVTHDERMLEWCDRVYHLQDGVLVEQ 220 + + + D V+++ Sbjct: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQG 221 >SA0297 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 195 bits (495), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 10/214 (4%), Positives = 34/214 (15%), Gaps = 2/214 (0%) Query: 4 QVTQTYGDGDGAMTVLNQLDLTVNEGEFVAVLGPSGSGKSTFLSAAGALLTPTSGEIFID 63 + +G + LD + + T + + + + Sbjct: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 Query: 64 GEPLSHKNKSELTELRLRKIGFMFQSAQLLPYLKVEEQLLYVAKLAKLSTKEAKERSSYL 123 + + R ++ + R Sbjct: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEW--SAFGIRPPLRLGEF 123 Query: 124 LKRLEVWERRNHYPEKLSGGQKQRVAIARAWMNKPAILFADEPTASLDFNRGCEVVRMIA 183 + P + + + Sbjct: 124 TMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNE 183 Query: 184 DEVTSEGKAAVMVTHDERMLEWCDRVYHLQDGVL 217 + + V + + + Y L + Sbjct: 184 TRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPV 217 >SA2149 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 14/219 (6%), Positives = 33/219 (15%), Gaps = 1/219 (0%) Query: 1 VMKQVTQTYGDGDGAMTVLNQLDLTVNEGEFVAVLGPSGSGKSTFLSAAGALLTPTSGEI 60 L+ ++ G L + A S Sbjct: 4 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSA 63 Query: 61 FIDGEPLSHKNKSELTELRLRKIGFMFQSAQLLPYLKVEEQLLYVAKLAKLSTKEAKERS 120 + R ++ + A + Sbjct: 64 VALRLTARPILDIA-LQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 Query: 121 SYLLKRLEVWERRNHYPEKLSGGQKQRVAIARAWMNKPAILFADEPTASLDFNRGCEVVR 180 + + V I+ + D + + Sbjct: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 Query: 181 MIADEVTSEGKAAVMVTHDERMLEWCDRVYHLQDGVLVE 219 + + V T + V +L Sbjct: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQG 221 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.132 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,834,094 Number of extensions: 651926 Number of successful extensions: 16971 Number of sequences better than 1.0e-05: 2113 Number of HSP's gapped: 14541 Number of HSP's successfully gapped: 2316 Length of query: 220 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 118 Effective length of database: 26,614,363 Effective search space: 3140494834 Effective search space used: 3140494834 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 114 (48.5 bits)