BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0578.0013.p (365 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin2470 [V] COG0577 ABC-type antimicrobial peptide transport sys... 202 6e-52 DRA0279 [V] COG0577 ABC-type antimicrobial peptide transport sys... 154 2e-37 L130944 [V] COG0577 ABC-type antimicrobial peptide transport sys... 133 5e-31 SA2150 [V] COG0577 ABC-type antimicrobial peptide transport syst... 127 3e-29 SPy0772 [V] COG0577 ABC-type antimicrobial peptide transport sys... 125 8e-29 >lin2470 [V] COG0577 ABC-type antimicrobial peptide transport system, permease component Length = 289 Score = 202 bits (514), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 0/363 (0%), Positives = 0/363 (0%), Gaps = 8/363 (2%) Query: 3 HSKARYSLIIVIMLLVSFLVLFVTGLARGLAYANISAVENMPANYYAVQKDADHAFRRSQ 62 + + L + + A A + R Sbjct: 10 LLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLT 69 Query: 63 LNETELSAARSIAGEQNAAPLAVQMSTITADKADVKADVTFFAVDMNGMLAPKVTQGTEI 122 A + Q A + ++ + + T Sbjct: 70 ARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHK 129 Query: 123 TNETQGSVVADSKLKESGVTIGSTIKDQASGLTFKVAGFVDDNSYSHTPVVYINTLDWKA 182 + + + S + F + + T + Sbjct: 130 FVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQD 189 Query: 183 MRQGFGQSGQDAEAVPY-NVIALKIDSAQASEITEKLGNVEVITQKQAIASIPGYSAEQN 241 G V+ + + + Sbjct: 190 KDDEQEV-----FYTTALAQDQADGYVLTGH-PVMLQGGEYVMFTYEGLGTGVQEFILTV 243 Query: 242 SLLMMXXXXXXXXXXXXXXXXXXXTIQKTSQFGILKAMGTKMSYLAWSVVGQXXXXXXXX 301 Sbjct: 244 303 Query: 302 XXXXXXXTFGMNLGLPDSMPFQLEGQTILLTCVLFVGMSLLGSLISVARVARVDALEAIG 361 Sbjct: 304 - 362 Query: 362 RAG 364 Sbjct: 363 365 >DRA0279 [V] COG0577 ABC-type antimicrobial peptide transport system, permease component Length = 289 Score = 154 bits (390), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 0/365 (0%), Positives = 0/365 (0%), Gaps = 21/365 (5%) Query: 1 MRHSKARYSLIIVIMLLVSFLVLFVTGLARGLAYANISAVENMPANYYAVQKDADHAFRR 60 + + L + + A A + R Sbjct: 8 RDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALR 67 Query: 61 SQLNETELSAARSIAGEQNAAPLAVQMSTITADKADVKADVTFFAVDMNGMLAPKVTQGT 120 A + + + + G+ P Sbjct: 68 LTARPILDIALQ----YRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEF 123 Query: 121 EITNETQGSVVADSKLKESGVTIGSTIKDQASGLTFKVAGFVDDNSYSHTPVVYINTLDW 180 T V + S +Q S ++ + + P + Sbjct: 124 --TMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 Query: 181 KAMRQGFGQSGQDAEAVPYNVIALKIDSAQASEITEKLG--NVEVITQKQAIASIPGYSA 238 R + + V Sbjct: 182 NETRPSQDKD--------DEQEVFYTTALAQD-----QADGYVLTGHPVMLQGGEYVMFT 228 Query: 239 EQNSLLMMXXXXXXXXXXXXXXXXXXXTIQKTSQFGILKAMGTKMSYLAWSVVGQXXXXX 298 + + + + Sbjct: 229 YEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 Query: 299 XXXXXXXXXXTFGMNLGLPDSMPFQLEGQTILLTCVLFVGMSLLGSLISVARVARVDALE 358 Sbjct: 289 348 Query: 359 AIGRA 363 Sbjct: 349 353 >L130944 [V] COG0577 ABC-type antimicrobial peptide transport system, permease component Length = 289 Score = 133 bits (334), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 0/366 (0%), Positives = 0/366 (0%), Gaps = 22/366 (6%) Query: 1 MRHSKARYSLIIVIMLLVSFLVLFVTGLARGLAYANISAVENMPANYYAVQKDADHAFRR 60 L + L + + +++ + A R Sbjct: 9 DLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRL 68 Query: 61 SQLNETELSAARSIAGEQNAAPLAVQMST----ITADKADVKADVTFFAVDMNGMLAPKV 116 + Q + A + ++ Sbjct: 69 TARPI-------LDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 Query: 117 TQGTEITNETQGSVVADSKLK-ESGVTIGSTIKDQASGLTFKVAGFVDDNSYSHTPVVYI 175 ++ + + + P V Sbjct: 122 EFTMPEHK--FVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLY 179 Query: 176 NTLDWKAMRQGFGQSGQDAEAVPYNVIALKIDSAQASEITEKLGNVEVITQKQAIASIPG 235 + + + Q+ V + + + + G Sbjct: 180 GLNETRPSQ--DKDDEQEVFYTTALAQDQA------DGYVLTGHPVMLQGGEYVMFTYEG 231 Query: 236 YSAEQNSLLMMXXXXXXXXXXXXXXXXXXXTIQKTSQFGILKAMGTKMSYLAWSVVGQXX 295 Sbjct: 232 291 Query: 296 XXXXXXXXXXXXXTFGMNLGLPDSMPFQLEGQTILLTCVLFVGMSLLGSLISVARVARVD 355 Sbjct: 292 351 Query: 356 ALEAIG 361 Sbjct: 352 357 >SA2150 [V] COG0577 ABC-type antimicrobial peptide transport system, permease component Length = 289 Score = 127 bits (319), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 0/359 (0%), Positives = 0/359 (0%), Gaps = 20/359 (5%) Query: 5 KARYSLIIVIMLLVSFLVLFVTGLARGLAYANISAVENMPANYYAVQKDADHAFRRSQLN 64 + + L + + A A + R Sbjct: 12 IWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTAR 71 Query: 65 ETELSAARSIAGEQNAAPLAVQMSTITADKADVKADVTFFAVDMNGMLAPKVTQGTEITN 124 A + + A A + + Sbjct: 72 PILDIALQYRF-DSQQTFTRAFKKQFAQTPALY--------RRSPEWSAFGIRPPLRLGE 122 Query: 125 ETQGSVVADSKLKESGVTIGSTIKDQASGLTFKVAGFVDDNSYSHTPVVYINTLDWKAMR 184 T + + + + ++ + + Sbjct: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 Query: 185 QGFGQSGQDAEAVPYNVIALKIDSAQASEITEKLGNVEVITQKQAIASIPGYSAEQNSLL 244 + + + + + G Sbjct: 183 E--------TRPSQDKDDEQ---EVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEG 231 Query: 245 MMXXXXXXXXXXXXXXXXXXXTIQKTSQFGILKAMGTKMSYLAWSVVGQXXXXXXXXXXX 304 Sbjct: 232 291 Query: 305 XXXXTFGMNLGLPDSMPFQLEGQTILLTCVLFVGMSLLGSLISVARVARVDALEAIGRA 363 Sbjct: 292 350 >SPy0772 [V] COG0577 ABC-type antimicrobial peptide transport system, permease component Length = 289 Score = 125 bits (315), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 0/372 (0%), Positives = 0/372 (0%), Gaps = 32/372 (8%) Query: 1 MRHSKARYSLIIVIMLLVSFLVLFVTGLARGLAYANISAVENMPANYYAVQKDADHAFRR 60 + + L + + A A + R Sbjct: 8 RDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALR 67 Query: 61 SQLN---ETELSAARSIAGEQNAAPLAVQMSTI-----TADKADVKADVTFFAVDMNGML 112 + L + + + A + L Sbjct: 68 LTARPILDIALQYRF-------DSQQT-FTRAFKKQFAQTPALY-RRSPEWSAFGIRPPL 118 Query: 113 APKVTQGTEITNETQGSVVADSKL-KESGVTIGSTIKDQASGLTFKVAGFVDDNSYSHTP 171 E + +S I D + ++ N+ + P Sbjct: 119 RLGEFTMPEH--KFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPP 176 Query: 172 VVYINTLDWKAMRQGFGQSGQDAEAVPYN--VIALKIDSAQASEITEKLGNVEVITQKQA 229 V+Y + + + + + + + Sbjct: 177 VLYGLNETRPSQDKD--------DEQEVFYTTALAQDQADGYVLTGHP--VMLQGGEYVM 226 Query: 230 IASIPGYSAEQNSLLMMXXXXXXXXXXXXXXXXXXXTIQKTSQFGILKAMGTKMSYLAWS 289 + Q +L + L Sbjct: 227 FTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIP 286 Query: 290 VVGQXXXXXXXXXXXXXXXTFGMNLGLPDSMPFQLEGQTILLTCVLFVGMSLLGSLISVA 349 Sbjct: 287 346 Query: 350 RVARVDALEAIG 361 Sbjct: 347 358 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.130 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,139,501 Number of extensions: 734777 Number of successful extensions: 11053 Number of sequences better than 1.0e-05: 8 Number of HSP's gapped: 11034 Number of HSP's successfully gapped: 8 Length of query: 365 Length of database: 38,378,431 Length adjustment: 108 Effective length of query: 257 Effective length of database: 25,922,359 Effective search space: 6662046263 Effective search space used: 6662046263 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 116 (49.3 bits)