BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0578.0007.p
         (169 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yetL [K] COG1846 Transcriptional regulators                         73   3e-13
YPO3266 [K] COG1846 Transcriptional regulators                         54   2e-07
STM2813 [K] COG1846 Transcriptional regulators                         53   2e-07
lin0291 [K] COG1846 Transcriptional regulators                         53   2e-07
ZemrR [K] COG1846 Transcriptional regulators                           51   9e-07

>BS_yetL [K] COG1846 Transcriptional regulators
          Length = 167

 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 68/128 (53%), Gaps = 1/128 (0%)

Query: 37  EAFFALVETTAGLVAVSEKYWQAQGLNGARIRVLVEIAK-QGGAILPSGLASRIGVTKAN 95
           E F +L + +  +  V E Y+  +GL+  + ++L+ +   +   + P+ LA R  VTKA 
Sbjct: 28  ELFLSLFDISKKMNHVMEHYFAGRGLSEGKFKILMLLFDAKDHRLSPTELAKRSNVTKAT 87

Query: 96  ISLLLTPLEKDGYISRTEHIRDGRKSVISLTEAGRALLSRHLPGNRETVAGKMNRLDTDE 155
           I+ LL  L +DG++SR  H  D RK  I LT  G+A L + LPG+   ++  M     +E
Sbjct: 88  ITGLLDGLARDGFVSRRHHTEDKRKISIELTTEGKARLEQFLPGHFSKISAVMENYSDEE 147

Query: 156 LRQLMALL 163
               + +L
Sbjct: 148 KDMFVKML 155


>YPO3266 [K] COG1846 Transcriptional regulators
          Length = 170

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 1/113 (0%)

Query: 55  KYWQAQGLNGARIRVLVEI-AKQGGAILPSGLASRIGVTKANISLLLTPLEKDGYISRTE 113
           K  +AQG+N      L+ + A++  +I PS L++ +G ++ N + +   LEK G+I R E
Sbjct: 46  KMLKAQGINETLFMALITLDAQESRSIQPSELSAALGSSRTNATRIADELEKKGWIERRE 105

Query: 114 HIRDGRKSVISLTEAGRALLSRHLPGNRETVAGKMNRLDTDELRQLMALLHKL 166
              D R   + LTEAG   L + LP   + +    + L   E +QL  L  KL
Sbjct: 106 SHNDRRCLHLHLTEAGIEFLHQLLPPQHKCLHFLWSTLTEQEQQQLEMLTRKL 158


>STM2813 [K] COG1846 Transcriptional regulators
          Length = 176

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 1/113 (0%)

Query: 55  KYWQAQGLNGARIRVLVEI-AKQGGAILPSGLASRIGVTKANISLLLTPLEKDGYISRTE 113
           K  +AQG+N      L+ + +++  +I PS L+  +G ++ N + +   LEK G+I R E
Sbjct: 46  KMLKAQGINETLFMALITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGWIERRE 105

Query: 114 HIRDGRKSVISLTEAGRALLSRHLPGNRETVAGKMNRLDTDELRQLMALLHKL 166
              D R   + LTE G+A L   LP     +    + L T E  QL  +  KL
Sbjct: 106 SDNDRRCLHLQLTEKGQAFLQEVLPPQHHCLHQLWSSLSTAEKDQLEHITRKL 158


>lin0291 [K] COG1846 Transcriptional regulators
          Length = 138

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 4/100 (4%)

Query: 59  AQGLNGARIRVLVEIAKQGGAILPSGLASRIGVTKANISLLLTPLEKDGYISRTEHIRDG 118
           A G++ A+   + +I      I    LA ++ VTK N++ LL  LE+ GYI+RT   + G
Sbjct: 33  AAGISTAQFDCIAQIGL-DNEITQQQLAEKLVVTKGNVTQLLAKLEQLGYITRT---KTG 88

Query: 119 RKSVISLTEAGRALLSRHLPGNRETVAGKMNRLDTDELRQ 158
           R+  I+LTE G+A    ++P        + ++L  DE ++
Sbjct: 89  REKHIALTEKGQACYRENVPKQEAFQQSQFDKLTRDEQKE 128


>ZemrR [K] COG1846 Transcriptional regulators
          Length = 176

 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 1/113 (0%)

Query: 55  KYWQAQGLNGARIRVLVEI-AKQGGAILPSGLASRIGVTKANISLLLTPLEKDGYISRTE 113
           K  +AQG+N      L+ + +++  +I PS L+  +G ++ N + +   LEK G+I R E
Sbjct: 46  KMLKAQGINETLFMALITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGWIERRE 105

Query: 114 HIRDGRKSVISLTEAGRALLSRHLPGNRETVAGKMNRLDTDELRQLMALLHKL 166
              D R   + LTE G   L   LP     +    + L T E  QL  +  KL
Sbjct: 106 SDNDRRCLHLQLTEKGHEFLREVLPPQHNCLHQLWSALSTTEKDQLEQITRKL 158


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.316    0.134    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,505,553
Number of extensions: 444679
Number of successful extensions: 1818
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 1821
Number of HSP's successfully gapped: 11
Length of query: 169
Length of database: 38,378,431
Length adjustment: 99
Effective length of query: 70
Effective length of database: 26,960,365
Effective search space: 1887225550
Effective search space used: 1887225550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)