BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0578.0004.p
         (137 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Cj1224 [P] COG2703 Hemerythrin                                         66   2e-11
Cj0045c [P] COG2703 Hemerythrin                                        47   7e-06

>Cj1224 [P] COG2703 Hemerythrin
          Length = 199

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 5/119 (4%)

Query: 1   MINWKDSYDIGVEKIDCQHRQLLVKLNEFFEACTNQQ-GKEKIEETLKFLKEYTLEHFSD 59
           +  W +SY +   KID QH++L  KL    E  +++   K +++E L     Y  +HF+D
Sbjct: 2   LPKWDNSYSVHNAKIDEQHKKLF-KLAAKVEVVSDRSVSKNEVKELLAEFFNYMKDHFND 60

Query: 60  EEHLMQDIDFPELAEHRKTHAEFVKTVLDLEESIKSKGVSVLSTIKLNRTLTDWLLNHI 118
           EE  MQ I +P L EHRK H E ++T+++L + IKS   + L   KL      WLL HI
Sbjct: 61  EEKYMQLIGYPNLEEHRKIHKEIIQTMINLIKDIKS--TNDLKE-KLYIVAKKWLLEHI 116


>Cj0045c [P] COG2703 Hemerythrin
          Length = 240

 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 10/131 (7%)

Query: 2   INWKDSYDIGVEKIDCQHRQLLVKLNEFFEACT------NQQGKEKIEETLKFLKEYTLE 55
           + W   + I   ++D QH +L+ ++              N Q K  +++ L  L +Y   
Sbjct: 3   VKWSRDFSIKNMQLDKQH-ELIFEITNLANDLALNIQDNNTQHKNDLKQILVKLFQYIKI 61

Query: 56  HFSDEEHLMQDIDFPELAEHRKTHAEFVKTVLDLEESIKSKGVSVLSTIKLNRTLTDWLL 115
           HF DEE  M+ IDFP + EH+K+H   V+   +L E   S  +  +S  +L+    DW+L
Sbjct: 62  HFKDEEKFMESIDFPLIEEHKKSHQILVEKTKELLEH--SNDIVKMSQ-ELSILTKDWIL 118

Query: 116 NHINKCDKLIG 126
           +H    D  I 
Sbjct: 119 DHFANEDLWIA 129


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 9,868,578
Number of extensions: 344850
Number of successful extensions: 901
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 900
Number of HSP's successfully gapped: 3
Length of query: 137
Length of database: 38,378,431
Length adjustment: 95
Effective length of query: 42
Effective length of database: 27,421,701
Effective search space: 1151711442
Effective search space used: 1151711442
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)