BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0574.0018.p
         (100 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc1801 [S] COG0599 Uncharacterized homolog of gamma-carboxymuco...   116   7e-27

>AGc1801 [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone
           decarboxylase subunit
          Length = 121

 Score =  116 bits (291), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 0/99 (0%), Positives = 0/99 (0%)

Query: 1   VSNAFATFMKEAPQQQQAWMETVQKLDAASRLDPKTEEIAYISVLAAVRLESGLPFHVKH 60
           + +           Q+ A    +   +A             + +           F  + 
Sbjct: 36  LEHGKRGKPSFDLLQRIAGYFNIIWDEAEELFFLAGSSDPKVVIDTVGLPPQYTAFANRL 95

Query: 61  AKALGATREEIISAVLLGLPAVGNAVIQALPVALQAYDS 99
                                                  
Sbjct: 96                                          134


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.316    0.128    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,481,746
Number of extensions: 207551
Number of successful extensions: 2220
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2224
Number of HSP's successfully gapped: 1
Length of query: 100
Length of database: 38,378,431
Length adjustment: 69
Effective length of query: 31
Effective length of database: 30,420,385
Effective search space: 943031935
Effective search space used: 943031935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)