BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0574.0012.p
         (95 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM1147 [R] COG2110 Predicted phosphatase homologous to the C-te...   101   2e-22
PA3693 [R] COG2110 Predicted phosphatase homologous to the C-ter...    83   1e-16
MT1950_2 [R] COG2110 Predicted phosphatase homologous to the C-t...    70   1e-12
Rv1899c_2 [R] COG2110 Predicted phosphatase homologous to the C-...    69   1e-12
mll7730 [R] COG2110 Predicted phosphatase homologous to the C-te...    66   2e-11

>STM1147 [R] COG2110 Predicted phosphatase homologous to the C-terminal
          domain of histone macroH2A1
          Length = 346

 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 4/79 (5%), Positives = 9/79 (11%)

Query: 11 LKVTKGDITKCRADIIVNAANTSLLGGGGVDGAIHRAGGPEILAGCMEIRNQQGGCAVGE 70
                          +     +             A G  ++               G 
Sbjct: 5  RIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGL 64

Query: 71 AVYTTAGNLLARYVIHTVG 89
                  L        + 
Sbjct: 65 TETYVGNWLAKHGSREKLI 83


>PA3693 [R] COG2110 Predicted phosphatase homologous to the C-terminal
          domain of histone macroH2A1
          Length = 346

 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 2/81 (2%), Positives = 11/81 (13%), Gaps = 4/81 (4%)

Query: 9  TLLKVTKGDITKCRADIIVNAANTSLLGGGGVDGAIHRAGGPEILAGCMEIRNQQGGCAV 68
             ++    +      +                   +       L    E+         
Sbjct: 2  QYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMY----PVPP 57

Query: 69 GEAVYTTAGNLLARYVIHTVG 89
                     +  ++     
Sbjct: 58 RPETQGLTETYVGNWLAKHGS 78


>MT1950_2 [R] COG2110 Predicted phosphatase homologous to the C-terminal
          domain of histone macroH2A1
          Length = 346

 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 6/82 (7%), Positives = 13/82 (15%), Gaps = 4/82 (4%)

Query: 11 LKVTKGDITKCRADIIVNAANTSLLGGGGVDGAIHRAGGPEILAGCMEIRNQQGGCAVGE 70
          +  +  +++      +      S              G   I    M             
Sbjct: 6  IPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMY----PVPPRPET 61

Query: 71 AVYTTAGNLLARYVIHTVGLRI 92
             T            +    I
Sbjct: 62 QGLTETYVGNWLAKHGSREKLI 83


>Rv1899c_2 [R] COG2110 Predicted phosphatase homologous to the C-terminal
          domain of histone macroH2A1
          Length = 346

 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 2/82 (2%), Positives = 10/82 (12%), Gaps = 4/82 (4%)

Query: 11 LKVTKGDITKCRADIIVNAANTSLLGGGGVDGAIHRAGGPEILAGCMEIRNQQGGCAVGE 70
           ++    +      +                   +       L    E            
Sbjct: 4  HRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAE----MYPVPPRP 59

Query: 71 AVYTTAGNLLARYVIHTVGLRI 92
                   +  ++        
Sbjct: 60 ETQGLTETYVGNWLAKHGSREK 81


>mll7730 [R] COG2110 Predicted phosphatase homologous to the C-terminal
          domain of histone macroH2A1
          Length = 346

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 5/79 (6%), Positives = 12/79 (15%), Gaps = 4/79 (5%)

Query: 11 LKVTKGDITKCRADIIVNAANTSLLGGGGVDGAIHRAGGPEILAGCMEIRNQQGGCAVGE 70
              +               + +                 ++                  
Sbjct: 8  HSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVP----PRPETQG 63

Query: 71 AVYTTAGNLLARYVIHTVG 89
             T  GN LA++      
Sbjct: 64 LTETYVGNWLAKHGSREKL 82


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.322    0.140    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,775,144
Number of extensions: 242423
Number of successful extensions: 459
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 455
Number of HSP's successfully gapped: 5
Length of query: 95
Length of database: 38,378,431
Length adjustment: 64
Effective length of query: 31
Effective length of database: 30,997,055
Effective search space: 960908705
Effective search space used: 960908705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)