BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0574.0006.p
         (66 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC2495 [K] COG1476 Predicted transcriptional regulators               79   2e-15
DR2454 [K] COG1476 Predicted transcriptional regulators                78   4e-15
CAC3324 [K] COG1476 Predicted transcriptional regulators               74   7e-14
MA3984 [K] COG1476 Predicted transcriptional regulators                73   1e-13
VNG7007 [K] COG1476 Predicted transcriptional regulators               71   5e-13

>CAC2495 [K] COG1476 Predicted transcriptional regulators
          Length = 64

 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 51/64 (79%)

Query: 1  MKNKLEAIRKQQGIKQEELAEALEVSRQTICSLENGRYNPSIILAFKLARYFKLSIEDIF 60
          MKN +  +R+Q G+ Q+ELAE + VSRQTI SLEN RYNPSI LA K+A+ F+L+IE++F
Sbjct: 1  MKNNIRKLREQFGLTQQELAERVSVSRQTIISLENERYNPSIFLAHKIAKSFELTIENVF 60

Query: 61 EYEE 64
           +E+
Sbjct: 61 IFED 64


>DR2454 [K] COG1476 Predicted transcriptional regulators
          Length = 64

 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 49/63 (77%)

Query: 1  MKNKLEAIRKQQGIKQEELAEALEVSRQTICSLENGRYNPSIILAFKLARYFKLSIEDIF 60
          MKN+++ +R +  + Q +LA+ L+VSRQTI +LE G+Y+PS+ LAFKLAR F L IEDIF
Sbjct: 1  MKNRIKVLRAEHNLTQADLADKLDVSRQTINALETGKYDPSLPLAFKLARLFGLRIEDIF 60

Query: 61 EYE 63
          + E
Sbjct: 61 QDE 63


>CAC3324 [K] COG1476 Predicted transcriptional regulators
          Length = 69

 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 49/64 (76%)

Query: 1  MKNKLEAIRKQQGIKQEELAEALEVSRQTICSLENGRYNPSIILAFKLARYFKLSIEDIF 60
          MK +++ +RKQ  + QEELA A+ V+RQTI SLE  +Y  S++LA+K+A YF L+IE+IF
Sbjct: 1  MKTRIQELRKQHKLSQEELALAVGVTRQTITSLEREKYTASLVLAYKIAHYFGLTIEEIF 60

Query: 61 EYEE 64
          ++ E
Sbjct: 61 DFSE 64


>MA3984 [K] COG1476 Predicted transcriptional regulators
          Length = 67

 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 46/63 (73%)

Query: 1  MKNKLEAIRKQQGIKQEELAEALEVSRQTICSLENGRYNPSIILAFKLARYFKLSIEDIF 60
          MKN ++  R    + QE LAE + V+RQTI ++E G+Y+PS+ LAFKL+R FK S+EDIF
Sbjct: 1  MKNNIKVYRAIHDLTQENLAEKVGVTRQTINAIEKGKYDPSLDLAFKLSRLFKASVEDIF 60

Query: 61 EYE 63
           YE
Sbjct: 61 LYE 63


>VNG7007 [K] COG1476 Predicted transcriptional regulators
          Length = 65

 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 48/65 (73%)

Query: 1  MKNKLEAIRKQQGIKQEELAEALEVSRQTICSLENGRYNPSIILAFKLARYFKLSIEDIF 60
          M+N+L+  R +  + QE+LA+ + V+RQTI +LE  RY+PS+ LAFKLA YF  SIEDIF
Sbjct: 1  MENELKVYRAKHDLTQEDLAKEVGVTRQTINALEAERYDPSLELAFKLAIYFDCSIEDIF 60

Query: 61 EYEEE 65
           Y+ +
Sbjct: 61 SYDSD 65


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.315    0.134    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 4,119,209
Number of extensions: 113567
Number of successful extensions: 791
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 820
Number of HSP's successfully gapped: 23
Length of query: 66
Length of database: 38,378,431
Length adjustment: 38
Effective length of query: 28
Effective length of database: 33,995,739
Effective search space: 951880692
Effective search space used: 951880692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)