BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0572.0004.p (300 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0372 [TK] COG0745 Response regulators consisting of a CheY-lik... 162 4e-40 all0129 [TK] COG0745 Response regulators consisting of a CheY-li... 160 3e-39 slr0115 [TK] COG0745 Response regulators consisting of a CheY-li... 158 8e-39 BS_phoP [TK] COG0745 Response regulators consisting of a CheY-li... 158 1e-38 ECs2707 [TK] COG0745 Response regulators consisting of a CheY-li... 157 3e-38 >BH0372 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 222 Score = 162 bits (411), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 88/220 (40%), Positives = 137/220 (62%), Gaps = 5/220 (2%) Query: 83 RILLVEDDEHICNTVKTFLSEAGYKVDACLDGSEALKNFYDNVYHLVILDIMLPGLSGHE 142 RIL++ED++ I ++ L GY+ DA GS+ L+ F + + LV+LD+MLP LSG E Sbjct: 3 RILIIEDEKKIARVLQLELEHEGYETDAAFSGSDGLETFQAHAWDLVLLDVMLPELSGLE 62 Query: 143 LLREFRKLNN-TPVLMMTALSDDDNQIRAFDGEADDYVTKPFKIQLLLKRVEALLRRSGA 201 +LR R + TP++++TA + +++ D A+DY+TKPF+I+ LL RV A LR Sbjct: 63 VLRRIRMTDPVTPIILLTARNSIPDKVSGLDLGANDYITKPFEIEELLARVRACLRTVQT 122 Query: 202 LAR---EIRFGKLTLLPEDFKAIYGSTEVPLTLKEFEILMLLVQNTGRTLSHETILSRVW 258 R + F +LT+ + G+ + LT KEFE+L+ ++N G+ LS E IL+ VW Sbjct: 123 RERVEDTLMFQELTINEKTRDVQRGNETIELTPKEFELLVFFIKNKGQVLSREQILTNVW 182 Query: 259 GYDFDGDGSTVHTHIKNLRAKLP-DNIIKTVRGVGYRLEE 297 G+D+ GD + + +++ LR KL ++TVRGVGYRL+E Sbjct: 183 GFDYYGDTNVIDVYVRYLRKKLSLTEALQTVRGVGYRLKE 222 >all0129 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 247 Score = 160 bits (404), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 96/228 (42%), Positives = 132/228 (57%), Gaps = 14/228 (6%) Query: 83 RILLVEDDEHICNTVKTFLSEAGYKVDACLDGSEALKNFYDNVYHLVILDIMLPGLSGHE 142 RIL+++DD I V L AGY V DG + L++LD+MLP + G Sbjct: 3 RILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFT 62 Query: 143 LLREFRKLNNT---PVLMMTALSDDDNQIRAFDGEADDYVTKPFKIQLLLKRVEALLRRS 199 + + R+ T PVLM+TALS +++ F+ ADDY+TKPF+++ +L RV ALLRR+ Sbjct: 63 VCQRLRRDERTAEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRT 122 Query: 200 GALAREIR------FGKLTLLPEDFKAIYGSTEVPLTLKEFEILMLLVQNTGRTLSHETI 253 + + + +G LTL+PE F+AI+ V LT EFE+L L+Q G+T+S I Sbjct: 123 DRIPQAAKHSEILNYGPLTLVPERFEAIWFGQTVKLTHLEFELLHCLLQRHGQTVSPSEI 182 Query: 254 LSRVWGYDFDGDGSTVHTHIKNLRAKL-PD----NIIKTVRGVGYRLE 296 L VWGYD D D T+ HI++LR KL PD IKTV G GY LE Sbjct: 183 LREVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 230 >slr0115 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 241 Score = 158 bits (400), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 94/228 (41%), Positives = 131/228 (57%), Gaps = 14/228 (6%) Query: 83 RILLVEDDEHICNTVKTFLSEAGYKVDACLDGSEALKNFYDNVYHLVILDIMLPGLSGHE 142 RIL+++DD I + V L AGY V +DG + L++LD+MLP + G Sbjct: 3 RILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62 Query: 143 LLREFRKLNNT---PVLMMTALSDDDNQIRAFDGEADDYVTKPFKIQLLLKRVEALLRRS 199 + + R+ T PVLM+TAL ++I+ FD ADDY+TKPF ++ +L RV ALLRR+ Sbjct: 63 VCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLRRT 122 Query: 200 GALAREIRF------GKLTLLPEDFKAIYGSTEVPLTLKEFEILMLLVQNTGRTLSHETI 253 + + + G LTL+PE F+AI+ + LT EFE+L L+Q G+T+S I Sbjct: 123 DRIPQAAKHSEILNQGPLTLVPERFEAIWFGKSIKLTHLEFELLHCLLQRHGQTVSPSDI 182 Query: 254 LSRVWGYDFDGDGSTVHTHIKNLRAKLPDN-----IIKTVRGVGYRLE 296 L VWGY+ D D T+ HI++LR KL N IKTV G GY LE Sbjct: 183 LREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGYCLE 230 >BS_phoP [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 223 Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 0/235 (0%), Positives = 0/235 (0%), Gaps = 17/235 (7%) Query: 80 MGIRILLVEDDEHICNTVKTFLSEAGYKVDACLDGSEALKNFYDNVYHLVILDIMLPGLS 139 M + ++ V+ + ++ N + +V L + Sbjct: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 Query: 140 GHELLREFRKLNNT-PVLMMTALSDDDNQIRAFDGEADDYVTKPFKIQLLLKRVEALLRR 198 ++ VL D ++ + + + + + Sbjct: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 Query: 199 SGALAR-----------EIRFGKLTLLPEDFKAIYGSTEVPLTLKEFEILMLLVQNTGRT 247 A + + Y E + + + Sbjct: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 Query: 248 LSHETILSRVWGYDFDGDGSTVHTHIKNLRAKLPDNI-----IKTVRGVGYRLEE 297 + + + + + + Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 235 >ECs2707 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 239 Score = 157 bits (396), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 87/220 (39%), Positives = 123/220 (55%), Gaps = 6/220 (2%) Query: 78 IFMGIRILLVEDDEHICNTVKTFLSEAGYKVDACLDGSEALKNFYDNVYHLVILDIMLPG 137 IFM +ILL+ED++ V LSEAGY +DA DG + L + Y L+ILDIMLPG Sbjct: 15 IFM--KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPG 72 Query: 138 LSGHELLREFRKLNNTPVLMMTALSDDDNQIRAFDGEADDYVTKPFKIQLLLKRVEALLR 197 + G ++L+ R TPV+ +TA D+++R D A+DY+ KPF LL RV A LR Sbjct: 73 MDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR 132 Query: 198 RSGALAREIRFGKLTLLPEDFKAIYGSTEVPLTLKEFEILMLLVQNTGRTLSHETILSRV 257 + AL + L + + + LT KEF++L LL G + I S + Sbjct: 133 QHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 192 Query: 258 WGYDFDGDGSTVHTHIKNLRAKL----PDNIIKTVRGVGY 293 WG +FD D +TV I+ LRAK+ P+ +I T+RG+GY Sbjct: 193 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 232 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.324 0.141 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,738,508 Number of extensions: 947770 Number of successful extensions: 3302 Number of sequences better than 1.0e-05: 404 Number of HSP's gapped: 2853 Number of HSP's successfully gapped: 404 Length of query: 300 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 194 Effective length of database: 26,153,027 Effective search space: 5073687238 Effective search space used: 5073687238 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 115 (48.9 bits)