BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0571.0026.p (464 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_lplA [G] COG1653 ABC-type sugar transport system, periplasmic... 139 1e-32 BH0482 [G] COG1653 ABC-type sugar transport system, periplasmic ... 117 3e-26 BS_ytcQ [G] COG1653 ABC-type sugar transport system, periplasmic... 100 7e-21 SP1796 [G] COG1653 ABC-type sugar transport system, periplasmic ... 98 3e-20 BH1064 [G] COG1653 ABC-type sugar transport system, periplasmic ... 97 6e-20 >BS_lplA [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 502 Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 122/421 (28%), Positives = 192/421 (45%), Gaps = 43/421 (10%) Query: 2 IMINRKWLSLVLCAGLAASIAGCGSSGNTNKEGAAGGTAEQSA---GAQTEGGSKPELKT 58 I + +KW++L L A + IAGC S +N + T + A ++ P LK Sbjct: 3 IRMRKKWMALPLAAMM---IAGCSHSETSNSASGSKDTIKIMAPLLSPESPSDKSPSLKA 59 Query: 59 LNIWSKDDYNTYKLAKVVEEQTGYKVKYEMLPADKAMDKLNLLISSAEPYDVITITGEKA 118 L E+ TG ++K +P DK N++++S E I I + A Sbjct: 60 L-----------------EKYTGKEIKVTWVPDSSYNDKFNIVMASGEMPHAIVIKDKSA 102 Query: 119 AYTDYAKMGALVDLTPLIDKYGENIKASISPESFEAMKVDGKIYAIPNRTSEFVGSSLMI 178 + K GA +L+P + Y +A + + V+G++Y I RT + + + ++I Sbjct: 103 GFIKSVKAGAFWELSPYLKDYKNLSQAD--EKILKNSSVNGEVYGI-YRTRDLIRACMII 159 Query: 179 RTDWLDKLGLKMPATLDELTAVLKAFKEKDPGGNGDKGAPLSIDGAQATMAN------VT 232 RTDWL +GL MP TLD+ VLKAFKEKDP GNG + + N + Sbjct: 160 RTDWLKNVGLDMPETLDDFYEVLKAFKEKDPDGNGKDDTYGMVVPKWMGLGNGSPWDVLQ 219 Query: 233 GAFGIATGWSEVDGKLVAAPLQPGFKEYLSYAADLYKQGLLDKEFAVNKDATLKEKFTSG 292 FG + +GKL+ + + L++ LY +GL++K+FAV A + G Sbjct: 220 IWFGAPNRYGVENGKLIPDFTTKEYMDALTFFKKLYDEGLINKDFAVMDSAKWNDPVVKG 279 Query: 293 RVGVIPLPWYDIPGIADALTKNFPDAK--YAYVPALKGKNGQAGLGMSGGFDRLTFIPKS 350 + GVI I A+ + K V +L+G NG+ S G+ + IPKS Sbjct: 280 KAGVIVDTGSRASQIQSAMEEADESNKDIIDIVGSLEGPNGKRTFPTS-GYSGMITIPKS 338 Query: 351 SKHPEDAIKWINAKLDKDTFKLIAI----GEEGKHFTYKDGVYSPI----LPLFTDERGL 402 S E +K + + LDK K I G +G+++ KDGV++ + L + GL Sbjct: 339 SVKTEKELKEVLSFLDKMNDKEAQILTNNGVKGRNYELKDGVFTSLEKNNKSLLYEHEGL 398 Query: 403 A 403 A Sbjct: 399 A 399 >BH0482 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 512 Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 97/330 (29%), Positives = 156/330 (47%), Gaps = 18/330 (5%) Query: 72 LAKVVEEQTGYKVKYEMLPADKAMDKLNLLISSAEPYDVITITGEKAAYTDYA-KMGALV 130 + K +EE T + +P D++N ++S VIT+ + + A + G Sbjct: 70 VIKEIEELTNTNLDLIWVPDAVKEDRVNAALASGNLPKVITLQDFRTSSVLNAFRSGQFW 129 Query: 131 DLTPLIDKYGENIKASISPESFEAMKVDGKIYAIPNRTSEFVGSSLMIRTDWLDKLGLKM 190 ++ P +D++ N+ + ++ E + VDGKIY I R ++IR DWL+ LGL+M Sbjct: 130 EIGPYLDEFP-NL-SEMNETILENVSVDGKIYGI-YRERPLSRQGVVIRQDWLENLGLEM 186 Query: 191 PATLDELTAVLKAFKEKDPGGNG-DKGAPLS-----IDGAQATMANVTGAFGIATGWS-E 243 P L+EL V +AF DP G+G D + I GA T+A+ G W + Sbjct: 187 PTNLEELYEVARAFTYDDPNGSGADDTVGFTDRNDLIFGAFKTLASYHGT---PNEWGFD 243 Query: 244 VDGKLVAAPLQPGFKEYLSYAADLYKQGLLDKEFAVNKDATLKEKFTSGRVGVIPLPWYD 303 +GKL+ + + E ++Y LY +GL++ EF V +E F +GR G+ D Sbjct: 244 DEGKLMPEFMTDEYVETMNYMKSLYDEGLINTEFPVTSKEQQQELFMTGRAGIYVGNMVD 303 Query: 304 IPGIADALTKNFPDAKYAYVPALKGKNGQAGLGMSGGFDRLTFIPKSSKHPEDAIKWINA 363 + D P+ + A + G +G+ + GG + + IPKSS E +K I A Sbjct: 304 ARNLRDKAKDINPEMEVAITNRIAGPDGEDRVWAQGGHNGIFAIPKSSVETEAELKRILA 363 Query: 364 KLDK----DTFKLIAIGEEGKHFTYKDGVY 389 D+ D + L+A G E H+ DG Y Sbjct: 364 FFDRIAEEDVYNLMAYGIEDVHYETIDGEY 393 >BS_ytcQ [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 440 Score = 100 bits (248), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 101/392 (25%), Positives = 166/392 (42%), Gaps = 47/392 (11%) Query: 11 LVLCAGLAASIAGCGSSGNTNKEGAAGGTAEQSAGAQTEGGSKPELKTLNIWSKDDYNTY 70 + L L +AGC + ++ EG AG SK +L + I Sbjct: 1 MCLVLALGGVLAGCKGTDQSSAEGKAGP------------DSKVKLSWMAILYHQQPPKD 48 Query: 71 KLAKVVEEQTGYKVKYEMLPADKAMDKLNLLISSAEPYDVITITGEKAAYTDYA------ 124 + K +E+ T ++ +P D+LN +++ ++TI K + A Sbjct: 49 RAIKEIEKLTNTELDITWVPDAVKEDRLNAALAAGNLPQIVTIQDIKNSSVMNAFRSGMF 108 Query: 125 -KMGALVDLTPLIDKYGENIKASISPESFEAMKVDGKIYAIPNRTSEFVGSSLMIRTDWL 183 ++G + P ++K + I +++ +DGK+Y I R ++IR DWL Sbjct: 109 WEIGDYIKDYPNLNKMNKLINKNVT--------IDGKLYGI-YRERPLSRQGIVIRKDWL 159 Query: 184 DKLGLKMPATLDELTAVLKAFKEKDPG--------GNGDKGAPLSIDGAQATMANVTGAF 235 D L LK P TLDEL V KAF E DP G D+ I GA T+ + Sbjct: 160 DNLNLKTPKTLDELYEVAKAFTEDDPDKDGKDDTFGLADRND--LIYGAFKTIGSYE--- 214 Query: 236 GIATGWSEVDGKLVAAPLQPGFKEYLSYAADLYKQGLLDKEFAVNKDATLKEKFTSGRVG 295 G+ T W E GK + +K+ ++Y L G ++K+F V +E F+ G+ G Sbjct: 215 GMPTDWKESGGKFTPDFMTQEYKDTMNYMKKLRDNGYMNKDFPVTSKTQQQELFSQGKAG 274 Query: 296 VIPLPWYDIPGIADALTKNFPDAKYAYVPALKGKNGQAGLGMSGGFDRLTFIPKSSKHPE 355 + D + D + K + +KG +G+ + SGG + + PK+S E Sbjct: 275 IYIGNMVDAVNLRDHASDK--SMKLEIINRIKGPDGKERVWASGGHNGVFAFPKTSVKTE 332 Query: 356 DAIKWINAKLDK----DTFKLIAIGEEGKHFT 383 +K I A D+ D + L+ G +G H+ Sbjct: 333 AELKRILAFFDRIAEEDVYSLMTYGIDGVHYN 364 >SP1796 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 538 Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 114/386 (29%), Positives = 164/386 (42%), Gaps = 52/386 (13%) Query: 10 SLVLCAGLAASIAGCGSSGNTNKEGAAGGTAEQSAGAQTEGGSKP--ELKTLNIW----- 62 S VL A +A CGS + S + EG + P E KTL Sbjct: 9 SAVLLTASLAVLAACGSKNTAS-----------SPDYKLEGVTFPLQEKKTLKFMTASSP 57 Query: 63 -SKDDYNTYKLAKVVEEQTGYKVKYEMLPADKAMDKLNLLISSAEPYDVITITG-EKAAY 120 S D N + + +E++TG + + +D A +K NL ISS + D I G Sbjct: 58 LSPKDPNEKLILQRLEKETGVHIDWTNYQSDFA-EKRNLDISSGDLPDAIHNDGASDVDL 116 Query: 121 TDYAKMGALVDLTPLIDKYGENIKASIS--PESFEAMKV-DGKIYAIP--------NRTS 169 ++AK G ++ + LIDKY N+K + PE M DG IY+ P + Sbjct: 117 MNWAKKGVIIPVEDLIDKYMPNLKKILDEKPEYKALMTAPDGHIYSFPWIEELGDGKESI 176 Query: 170 EFVGSSLMIRTDWLDKLGLKMPATLDELTAVLKAFKEKDPGGNGDKGA-PLS-IDG-AQA 226 V I DWL KLGL+MP T D+L VL+AFK DP GNG+ P S I G Sbjct: 177 HSVNDMAWINKDWLKKLGLEMPKTTDDLIKVLEAFKNGDPNGNGEADEIPFSFISGNGNE 236 Query: 227 TMANVTGAFGIATGWSEV----DGKLVAAPLQPGFKEYLSYAADLYKQGLLDKEFAVNKD 282 + AFGI + DGK+ +KE + + L ++GL+DKE + Sbjct: 237 DFKFLFAAFGIGDNDDHLVVGNDGKVDFTADNDNYKEGVKFIRQLQEKGLIDKEAFEHDW 296 Query: 283 ATLKEKFTSGRVGVIPLPWYDIPGIADALTKNFPDAKYAYVPALKGKNGQAGLGMSGGF- 341 + K + GV W D + Y +P L G +GQ + + G Sbjct: 297 NSYIAKGHDQKFGVY-FTW-------DKNNVTGSNESYDVLPVLAGPSGQKHVARTNGMG 348 Query: 342 ---DRLTFIPKSSKHPEDAIKWINAK 364 D++ I +K+ E KWI+A+ Sbjct: 349 FARDKMV-ITSVNKNLELTAKWIDAQ 373 >BH1064 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 550 Score = 97.1 bits (240), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 106/361 (29%), Positives = 157/361 (43%), Gaps = 49/361 (13%) Query: 4 INRKWLSLVLCAGLAASIAGCGSSG----NTNKEGAAGGTAEQSA--GAQTEGGSKPELK 57 I +L +L G+ + + GS+ NTN++G T ++ G + G Sbjct: 5 IVHSFLVGLLAVGILTACSQEGSTTEDETNTNEDGTVTITTARTLDDGTVFKDGEDVHDN 64 Query: 58 TLNIWSKDDYNTYKLAKVVEEQTGYKVKYEML-PADKAMD-KLNLLISSAEPYDVITITG 115 + W+ EE+ G K E P D+ + +L L++SS E + Sbjct: 65 VVTRWA-------------EEELGIKFVTEWTQPNDEQFNTQLRLMMSSGEKLPDVFQVN 111 Query: 116 EKAAYTDYAKMGALVDLTPLIDKYGE-NIKASIS--PESFEAMKVDGKIYAIPNRTSEFV 172 + A D G ++ + I+ Y +K P++F DG Y IP R S Sbjct: 112 DTAIKADLLSSGLVMPVDEAIETYASPRLKQLFEQFPQAFYPSTKDGVRYGIP-RFSGGN 170 Query: 173 GSS--LMIRTDWLDKLGLKMPATLDELTAVLKAFKEKDPGGNGDKGAPLSID-------- 222 GS L IR DWLDK L+ P TL+EL ++ F +DP G K + I Sbjct: 171 GSDTLLWIRQDWLDKFDLEPPTTLEELEHIMDVFVNEDPNETG-KNDTIGITFAAGDYGF 229 Query: 223 --GAQATMANVTGAFG--IATGWSE-VDGKLVAAPLQPGFKEYLSYAADLYKQGLLDKEF 277 G A + V GAFG + WS+ DG LV +QP K+ L+ + Y++G L +F Sbjct: 230 RGGNIADSSWVFGAFGDFVPGAWSKGDDGSLVYGSIQPSMKDGLAKIHEWYEKGYLATDF 289 Query: 278 AVNKDATLKEKFTSGRVGVIPL-PW---YDIPGIADALTKNFPDAKYAYVPALKGKNGQA 333 A+ +E F SGR G++ PW Y I +A + PDA P + G NGQA Sbjct: 290 AILSAGDAQESFISGRSGIMAAPPWAHGYPIGEMAQVV----PDAIVKPFPHVSGPNGQA 345 Query: 334 G 334 G Sbjct: 346 G 346 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.315 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 36,568,162 Number of extensions: 1607650 Number of successful extensions: 2600 Number of sequences better than 1.0e-05: 13 Number of HSP's gapped: 2582 Number of HSP's successfully gapped: 13 Length of query: 464 Length of database: 38,378,431 Length adjustment: 110 Effective length of query: 354 Effective length of database: 25,691,691 Effective search space: 9094858614 Effective search space used: 9094858614 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 118 (50.1 bits)