BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0571.0025.p (291 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_lplC [G] COG0395 ABC-type sugar transport system, permease co... 232 6e-61 BS_ytcP [G] COG0395 ABC-type sugar transport system, permease co... 224 1e-58 BH0481 [G] COG0395 ABC-type sugar transport system, permease com... 224 2e-58 BH1066 [G] COG0395 ABC-type sugar transport system, permease com... 201 1e-51 SP1797 [G] COG0395 ABC-type sugar transport system, permease com... 181 1e-45 >BS_lplC [G] COG0395 ABC-type sugar transport system, permease component Length = 295 Score = 232 bits (591), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 118/243 (48%), Positives = 167/243 (68%), Gaps = 5/243 (2%) Query: 51 ILPVGFQLDTLMQVISSSVFIRAFCISVGVTAVGTIISILMTALTAYPLSKRNLPGISFC 110 I P F LD V S+ F+R+ +S+ +T VGT + + T AYPL+KR++ G + Sbjct: 56 IFPKTFTLDAYKYVFSTPTFLRSMGVSIFITVVGTAVQLFFTFTMAYPLAKRHVKGRNLL 115 Query: 111 MVLFIFTMLFSGGLIPNYLLMRQLHLVDNLWVLILPGMISVFNMLVIKSYYESLPEALEE 170 + L IF+MLFSGG+IP YL+++ L L+D W LILP I+ FN+++IK++++ LP LEE Sbjct: 116 LNLVIFSMLFSGGMIPTYLVVKSLGLLDTYWALILPMAINPFNLIIIKNFFQQLPRELEE 175 Query: 171 SARIDGAKTYTILFRIILPLSMPVIATIALFYAVGYWNDYFGPMIYINDTALKTLQLYLQ 230 SA+IDG + +RI LPLS PVIAT ALFYAVG WND+F ++YIND+A LQ+ L+ Sbjct: 176 SAKIDGCSEIGVFWRIALPLSKPVIATFALFYAVGIWNDFFHALLYINDSAKWPLQMVLR 235 Query: 231 DVVMDANNANLTNKSIDDLMNMSP--EGIRAATVVASTVPILLVYPFMQKYFIKGVLIGS 288 V + ++LT + D + N P +GI+ A +V +T+PIL VYPF+QK+F KG+LIGS Sbjct: 236 QVTIL---SDLTATNGDTMQNAVPPEQGIKLAVIVIATLPILAVYPFLQKHFAKGMLIGS 292 Query: 289 VKG 291 VKG Sbjct: 293 VKG 295 >BS_ytcP [G] COG0395 ABC-type sugar transport system, permease component Length = 286 Score = 224 bits (570), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 113/285 (39%), Positives = 184/285 (64%), Gaps = 6/285 (2%) Query: 10 LLDIGVYAFXXXXXXXXXXXXXSVFSKAVSEEWAITSGKVGILPVGFQLDTLMQVISSSV 69 L D+ +Y F V + + + + S K ++P F LD + S+ + Sbjct: 5 LFDMLIYGFLLMFALICVLPFIHVIAASFATVEEVVSKKFILIPTTFSLDAYRYIFSTDI 64 Query: 70 FIRAFCISVGVTAVGTIISILMTALTAYPLSKRNLPGISFCMVLFIFTMLFSGGLIPNYL 129 ++ +SV VT +GT +S+ +++L AY LS+R+L G M L +FTMLFSGG+IP +L Sbjct: 65 IYKSLLVSVFVTVIGTAVSMFLSSLMAYGLSRRDLIGRQPLMFLVVFTMLFSGGMIPTFL 124 Query: 130 LMRQLHLVDNLWVLILPGMISVFNMLVIKSYYESLPEALEESARIDGAKTYTILFRIILP 189 +++ L L+D+ W LILP I+ FN++++K++++++P +LEESA+IDG I F+I+LP Sbjct: 125 VVKSLGLLDSYWALILPTAINAFNLIILKNFFQNIPSSLEESAKIDGCNDLGIFFKIVLP 184 Query: 190 LSMPVIATIALFYAVGYWNDYFGPMIYINDTALKTLQLYLQDVVMDANNANLTNKSIDDL 249 LS+P IATI+LFYAV YWN Y ++Y+ND+A +Q+ L+ +V+ ++ + ++ Sbjct: 185 LSLPAIATISLFYAVTYWNTYMTAILYLNDSAKWPIQVLLRQIVIVSSG---MQGDMSEM 241 Query: 250 MNMSP---EGIRAATVVASTVPILLVYPFMQKYFIKGVLIGSVKG 291 + SP + I+ A +V +T+P+LLVYPF+QK+F KG L+GSVKG Sbjct: 242 GSGSPPPEQTIKMAVIVVATIPVLLVYPFIQKHFAKGALLGSVKG 286 >BH0481 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 224 bits (570), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 108/242 (44%), Positives = 166/242 (68%), Gaps = 1/242 (0%) Query: 51 ILPVGFQLDTLMQVISSSVFIRAFCISVGVTAVGTIISILMTALTAYPLSKRNLPGISFC 110 + P F LD + S+ + R+ IS+ VT VGT S+ +T+L AY LS+++L G Sbjct: 52 LFPTTFSLDAYRYIFSTDIIFRSLIISILVTVVGTGFSMFLTSLMAYGLSRKDLDGRRVL 111 Query: 111 MVLFIFTMLFSGGLIPNYLLMRQLHLVDNLWVLILPGMISVFNMLVIKSYYESLPEALEE 170 M L +FTMLFSGG+IP +L++R L L+D W LI+P I+ FN++++K++++++PE+LEE Sbjct: 112 MFLVVFTMLFSGGMIPTFLVVRSLGLLDTYWALIIPTAINAFNLIILKNFFQNIPESLEE 171 Query: 171 SARIDGAKTYTILFRIILPLSMPVIATIALFYAVGYWNDYFGPMIYINDTALKTLQLYLQ 230 SA+IDG I FRI+ PLSMP IATI+LFYAV YWN + ++Y+ND+++ +Q+ L+ Sbjct: 172 SAKIDGCNDVGIFFRIVFPLSMPAIATISLFYAVTYWNTFMQAILYLNDSSMWPIQVLLR 231 Query: 231 DVVMDANNANLTNKSIDDLMNMSPEG-IRAATVVASTVPILLVYPFMQKYFIKGVLIGSV 289 +V+ ++ + M PE I+ A +V +T+P+L+VYPF+QK+F KG L+GSV Sbjct: 232 QIVIMSSGMQGDLTELGAGFVMPPEQTIKMAVIVVATIPVLIVYPFIQKHFAKGALLGSV 291 Query: 290 KG 291 KG Sbjct: 292 KG 293 >BH1066 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 201 bits (510), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 109/290 (37%), Positives = 176/290 (60%), Gaps = 5/290 (1%) Query: 4 RTKGDLLLDIGVYAFXXXXXXXXXXXXXSVFSKAVSEEWAITSGKVGILPVGFQLDTLMQ 63 +TKG + Y F +F+ ++S A + V LPV F LD + Sbjct: 5 KTKGYKVFTAFNYTFLLLFAVLCILPLVHIFAVSLSGSGAAAANLVMFLPVDFTLDAYER 64 Query: 64 VISSSVFIRAFCISVGVTAVGTIISILMTALTAYPLSK--RNLPGISFCMVLFIFTMLFS 121 I++ FIR+F ISV +GT+IS+ AY LSK R+ G F + F+ TMLF+ Sbjct: 65 TIANDNFIRSFLISVVRVVLGTVISMGAMLCAAYALSKEDRDFKGRKFYIWFFVITMLFN 124 Query: 122 GGLIPNYLLMRQLHLVDNLWVLILPGMISVFNMLVIKSYYES-LPEALEESARIDGAKTY 180 GGL+P Y+++ L L + +W L+LP I+ FN++++ +++ + +P++LEESA IDGA + Sbjct: 125 GGLVPTYMVVTGLGLTNTIWALVLPPAINAFNLILLLNFFRTAVPKSLEESAFIDGANHF 184 Query: 181 TILFRIILPLSMPVIATIALFYAVGYWNDYFGPMIYINDTALKTLQLYLQDVVMDANNAN 240 I +I LP+S+P IAT++LF V +WN +F MIY ND LQ +LQ +V+ + + Sbjct: 185 QIFLKIYLPISVPAIATVSLFTMVFHWNSWFDGMIYNNDARNYPLQTFLQTIVVQQDFSQ 244 Query: 241 LTNKSIDDLMNMSPEGIRAATVVASTVPILLVYPFMQKYFIKGVLIGSVK 290 +T+ + L N+S ++AA + + +P+L+VYPF+QKYF+KG+++G+ K Sbjct: 245 ITDA--ETLRNLSQRTVQAAQIFIAALPMLIVYPFIQKYFVKGIVLGAEK 292 >SP1797 [G] COG0395 ABC-type sugar transport system, permease component Length = 305 Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 90/241 (37%), Positives = 153/241 (63%), Gaps = 2/241 (0%) Query: 53 PVGFQLDTLMQVISSSVFIRAFCISVGVTAVGTIISILMTALTAYPLSKRNLPGISFCMV 112 P + ++ +V S +R F S+ + +++L++ TAYPLSK++L G + Sbjct: 65 PADWTVEGYQRVFSDQSILRGFINSLLYSFGFAALTVLLSVFTAYPLSKKDLVGRRWINY 124 Query: 113 LFIFTMLFSGGLIPNYLLMRQLHLVDNLWVLILPGMISVFNMLVIKSYYESLPEALEESA 172 I TM F GGL+P YLL+++L +++ W +I+PG ++V+N+++ ++Y++ LPE L E+A Sbjct: 125 FLIVTMFFGGGLVPTYLLVKELGMLNTPWAIIVPGAVNVWNIILARAYFQGLPEELVEAA 184 Query: 173 RIDGAKTYTILFRIILPLSMPVIATIALFYAVGYWNDYFGPMIYINDTALKTLQLYLQDV 232 IDGA I F+I+LPL+ P++ + L+ VG WN YF MIYI D L+ LQL L+ + Sbjct: 185 VIDGANDLQIFFKIMLPLAKPIMFVLFLYAFVGQWNSYFDAMIYIKDPNLEPLQLVLRKI 244 Query: 233 VMDANNAN--LTNKSIDDLMNMSPEGIRAATVVASTVPILLVYPFMQKYFIKGVLIGSVK 290 ++ + + ++ + M E I+ AT+V S++P++++YPF QKYF KG++ GS+K Sbjct: 245 LIQSQPGQDMIGAQAAMNEMKRLAELIKYATIVISSLPLIVMYPFFQKYFDKGIMAGSLK 304 Query: 291 G 291 G Sbjct: 305 G 305 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.327 0.141 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,711,536 Number of extensions: 644751 Number of successful extensions: 3159 Number of sequences better than 1.0e-05: 141 Number of HSP's gapped: 2975 Number of HSP's successfully gapped: 141 Length of query: 291 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 186 Effective length of database: 26,268,361 Effective search space: 4885915146 Effective search space used: 4885915146 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 115 (48.9 bits)