BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0571.0024.p (323 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1065 [G] COG4209 ABC-type polysaccharide transport system, per... 258 7e-69 BH0484 [G] COG4209 ABC-type polysaccharide transport system, per... 241 2e-63 BS_lplB [G] COG4209 ABC-type polysaccharide transport system, pe... 238 1e-62 BH1911 [G] COG4209 ABC-type polysaccharide transport system, per... 226 3e-59 BH2112 [G] COG4209 ABC-type polysaccharide transport system, per... 207 2e-53 >BH1065 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 317 Score = 258 bits (660), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 125/260 (48%), Positives = 185/260 (71%) Query: 57 GVLIAFQDFNIFDGIRGSEWVGLEQFHKLVQSEEFGQVFMNTLLISVYKIVLLFPVPIVI 116 G+++AFQD+ + G GSEWVGL+ F + + + QV NTL+ISV K++ VPI++ Sbjct: 51 GIVMAFQDYKPWLGFTGSEWVGLQHFITMFEYDYAKQVIWNTLVISVLKMIFGLIVPIIV 110 Query: 117 ALVLNEVRLMFFKRTIQTIIYLPHFLSWVIISGLFVTILSTSGGLVNNIIQWFGGEPVSF 176 AL+LNE+ M KRT+QTIIYLP+FLSWVI+ G+ + +LS GG+VN + FG +P+ F Sbjct: 111 ALLLNEMYQMVVKRTVQTIIYLPYFLSWVILGGILIDVLSPDGGIVNQALGLFGIDPIFF 170 Query: 177 FVSNQYFRSLVVFTAGWKEVGWNAIVFIAAIAGIDQEQYEAASIDGAGRIRRMLHISLPG 236 SN +FR+ VV + WKE G+N IVF+AAI ++ YEAA +DGA R ++ LHI+LP Sbjct: 171 LGSNDWFRTTVVISDLWKETGFNTIVFLAAITAVNPNLYEAAVVDGANRWKQTLHITLPA 230 Query: 237 ILPTVVLMFILRLGSVLDAGTEQILTMYNPVVYETADVIGTFVYRIGLGKMDYSFSTAVG 296 +LP ++++ L LG++L+AG +QI +YNP+VY+T D+I T+VYR+ L D+S+ TAVG Sbjct: 231 MLPIIIVVATLSLGNILNAGFDQIFNLYNPLVYQTGDIIDTYVYRVSLVNGDFSYGTAVG 290 Query: 297 LFNSVVGFILIVSGNYISRK 316 LF S++ +LI+ G ++ K Sbjct: 291 LFKSLISLVLIIIGYRLAYK 310 >BH0484 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 325 Score = 241 bits (614), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 117/267 (43%), Positives = 181/267 (67%) Query: 57 GVLIAFQDFNIFDGIRGSEWVGLEQFHKLVQSEEFGQVFMNTLLISVYKIVLLFPVPIVI 116 G++IAFQD+ F G+ GSEWVG + F +L F Q+ NTL++ +Y ++ FPVPI++ Sbjct: 59 GLIIAFQDYQPFLGVTGSEWVGFKHFERLFTEPTFFQLLRNTLVLFLYNLIFFFPVPIIL 118 Query: 117 ALVLNEVRLMFFKRTIQTIIYLPHFLSWVIISGLFVTILSTSGGLVNNIIQWFGGEPVSF 176 A++LNE+RLM FKR +QT+IY+PHF+SWVI+ L + +T GG++N II G+ V+F Sbjct: 119 AVLLNEIRLMVFKRFVQTMIYIPHFMSWVIVVSLTYVLFTTDGGVINEIIYSITGKNVNF 178 Query: 177 FVSNQYFRSLVVFTAGWKEVGWNAIVFIAAIAGIDQEQYEAASIDGAGRIRRMLHISLPG 236 +S +FR L + W+E GW I++ AAIA ID YEAA +DGA R R++ HI+LP Sbjct: 179 LMSEDWFRPLYILQVIWREAGWATIIYFAAIAAIDPSLYEAAKMDGANRFRQIWHITLPA 238 Query: 237 ILPTVVLMFILRLGSVLDAGTEQILTMYNPVVYETADVIGTFVYRIGLGKMDYSFSTAVG 296 I +V++ IL++G +L+ G E + M N + E A++ T+VY GL + +S+STAVG Sbjct: 239 IRSVIVVLLILKIGDILELGFEHVFLMLNAMNREVAEIFDTYVYTAGLKEGQFSYSTAVG 298 Query: 297 LFNSVVGFILIVSGNYISRKLLKRGIW 323 F S+VG I+++ N++++K + G++ Sbjct: 299 FFKSIVGLIMVMLANWLAKKFGEEGVY 325 >BS_lplB [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 318 Score = 238 bits (607), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 121/266 (45%), Positives = 177/266 (66%) Query: 57 GVLIAFQDFNIFDGIRGSEWVGLEQFHKLVQSEEFGQVFMNTLLISVYKIVLLFPVPIVI 116 GVLIAF+D++ + G SEWVG + F + +F ++ NTL+++ ++ FP P+++ Sbjct: 52 GVLIAFKDYSPYLGFWKSEWVGFDYFKDFFMNPDFFRLLRNTLMLASLDLLFAFPAPLIL 111 Query: 117 ALVLNEVRLMFFKRTIQTIIYLPHFLSWVIISGLFVTILSTSGGLVNNIIQWFGGEPVSF 176 AL+LNEVR +KR IQT IY+PHF+SW I+ + + G++N +I GE +SF Sbjct: 112 ALLLNEVRKAVYKRCIQTFIYVPHFVSWTIVVSITFVFFTVDTGVINKLIMSLTGEQISF 171 Query: 177 FVSNQYFRSLVVFTAGWKEVGWNAIVFIAAIAGIDQEQYEAASIDGAGRIRRMLHISLPG 236 +FR ++V + WKE GW I+F+AA+A +DQEQYEAA +DGAGR RRM HI+LP Sbjct: 172 LSDADWFRPMIVMQSIWKETGWGTILFLAALATVDQEQYEAAIMDGAGRFRRMWHITLPA 231 Query: 237 ILPTVVLMFILRLGSVLDAGTEQILTMYNPVVYETADVIGTFVYRIGLGKMDYSFSTAVG 296 I T++++ ILR+GS L+ G EQ+ M N + AD+ T+VY +G+ + YS+STAVG Sbjct: 232 IRSTIIVLLILRIGSFLNLGFEQVYLMTNSLNRSVADIFDTYVYMMGITQGAYSYSTAVG 291 Query: 297 LFNSVVGFILIVSGNYISRKLLKRGI 322 LF SVVG ILI NYI++K + G+ Sbjct: 292 LFKSVVGIILIFGANYIAKKFDQEGL 317 >BH1911 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 226 bits (577), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 114/268 (42%), Positives = 176/268 (65%), Gaps = 2/268 (0%) Query: 57 GVLIAFQDFNIFDGIRGSEWVGLEQFHKLVQSEEFGQVFMNTLLISVYKIVLLFPVPIVI 116 G +AFQ+F EWVGL+ F +L Q F V NTL +S+ +++ F +PI+ Sbjct: 51 GWTMAFQNFRPGLSFFEQEWVGLQHFIELFQDNRFYLVLRNTLAMSIMGLIVGFTMPILF 110 Query: 117 ALVLNEVRLMFFKRTIQTIIYLPHFLSWVIISGLFVTILSTSGGLVNNIIQWFG--GEPV 174 A++LNEVR M FKRT+QT+ YLPHF+SWV+++G+ +LS GG+VN ++ FG +PV Sbjct: 111 AVLLNEVRHMVFKRTVQTVSYLPHFVSWVVVAGIVTKMLSIDGGIVNQLLMAFGFVDQPV 170 Query: 175 SFFVSNQYFRSLVVFTAGWKEVGWNAIVFIAAIAGIDQEQYEAASIDGAGRIRRMLHISL 234 F ++F +V + WKE+GWN+I+F+AA+AGID + YEAA +DGA R R++ HI+L Sbjct: 171 QFMAKGEWFWVIVTLSDLWKEMGWNSIIFLAAMAGIDPQLYEAAKVDGASRWRQIWHITL 230 Query: 235 PGILPTVVLMFILRLGSVLDAGTEQILTMYNPVVYETADVIGTFVYRIGLGKMDYSFSTA 294 PGI PT++++ IL +G ++ G E+ + NP+V + ++V+ + GLG YS+ TA Sbjct: 231 PGIRPTILVILILSIGHLMAIGFEKQFLLGNPLVVDYSEVLDLYALNYGLGLGRYSYGTA 290 Query: 295 VGLFNSVVGFILIVSGNYISRKLLKRGI 322 +G+FNSVV IL+ N I ++ + + Sbjct: 291 IGIFNSVVCIILLFLANGIFKRFTNQSV 318 >BH2112 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 337 Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 107/260 (41%), Positives = 164/260 (63%), Gaps = 2/260 (0%) Query: 60 IAFQDFNIFDGIRGSEWVGLEQFHKLVQSEEFGQVFMNTLLISVYKIVLLFPVPIVIALV 119 IAFQDF I +W G + F L F +V NTL +S+ +VL F I +A++ Sbjct: 72 IAFQDFRPARPIFDQDWAGFKHFTFLFTDPRFFEVLRNTLAMSLINLVLGFVTAIGLAIL 131 Query: 120 LNEVRLMFFKRTIQTIIYLPHFLSWVIISGLFVTILSTSGGLVNNIIQWFG--GEPVSFF 177 LNE+R + FKR +QTI Y+PHFLSWV+ +GL LS G++N ++ G EP+ + Sbjct: 132 LNELRNLTFKRVVQTISYMPHFLSWVVAAGLVSAALSIENGIINIVLMKLGMISEPIMWL 191 Query: 178 VSNQYFRSLVVFTAGWKEVGWNAIVFIAAIAGIDQEQYEAASIDGAGRIRRMLHISLPGI 237 +YF ++ + WK VGWN I+++AAI ID EQYEAA IDGA R++R+ +I+LPG+ Sbjct: 192 GVGEYFWGIIGASDVWKNVGWNTIIYLAAITMIDTEQYEAAEIDGATRLQRIWYITLPGM 251 Query: 238 LPTVVLMFILRLGSVLDAGTEQILTMYNPVVYETADVIGTFVYRIGLGKMDYSFSTAVGL 297 P +V++ I+ LG +L++G E + NP+ + A+ + FV R G+ ++S +TA G+ Sbjct: 252 RPVIVILLIMNLGYILESGFEAQYLLMNPMNMDFAENLDIFVLRYGINMGNFSLATAAGI 311 Query: 298 FNSVVGFILIVSGNYISRKL 317 F +VV FI + S N+I+++L Sbjct: 312 FKTVVSFIFLFSANHIAKRL 331 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.145 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,321,099 Number of extensions: 831550 Number of successful extensions: 2640 Number of sequences better than 1.0e-05: 141 Number of HSP's gapped: 2560 Number of HSP's successfully gapped: 141 Length of query: 323 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 216 Effective length of database: 26,037,693 Effective search space: 5624141688 Effective search space used: 5624141688 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 116 (49.3 bits)