BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0571.0015.p (302 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1066 [G] COG0395 ABC-type sugar transport system, permease com... 276 2e-74 BS_lplC [G] COG0395 ABC-type sugar transport system, permease co... 206 4e-53 BS_ytcP [G] COG0395 ABC-type sugar transport system, permease co... 204 1e-52 BH0481 [G] COG0395 ABC-type sugar transport system, permease com... 204 2e-52 lin2116 [G] COG0395 ABC-type sugar transport system, permease co... 191 1e-48 >BH1066 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 276 bits (707), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 132/288 (45%), Positives = 191/288 (66%), Gaps = 6/288 (2%) Query: 15 RIFQIFNIIVLTFMAFLCLLPILNLVAVSFSSRSVVEANQVGLWPKGLNLSSYEYIFSNS 74 ++F FN L A LC+LP++++ AVS S AN V P L +YE +N Sbjct: 10 KVFTAFNYTFLLLFAVLCILPLVHIFAVSLSGSGAAAANLVMFLPVDFTLDAYERTIAND 69 Query: 75 QFFKSLWITVQRTVFGLIVELSLTILVAYPLSKTNRVFRLRSMYVWFFMVTMVFNGGLIP 134 F +S I+V R V G ++ + + AY LSK +R F+ R Y+WFF++TM+FNGGL+P Sbjct: 70 NFIRSFLISVVRVVLGTVISMGAMLCAAYALSKEDRDFKGRKFYIWFFVITMLFNGGLVP 129 Query: 135 TYLVVNELHLVNSIWALILPEAIIMFNVLLLLNFFR-AIPNELEEAALMDGAGWFVTLTR 193 TY+VV L L N+IWAL+LP AI FN++LLLNFFR A+P LEE+A +DGA F + Sbjct: 130 TYMVVTGLGLTNTIWALVLPPAINAFNLILLLNFFRTAVPKSLEESAFIDGANHFQIFLK 189 Query: 194 VYLPLSLPSLATITLFILVRHWNSWFDGLIYMNLPDQYPLMTYLQTMVLNLDLSQLSSTA 253 +YLP+S+P++AT++LF +V HWNSWFDG+IY N YPL T+LQT+V+ D SQ++ Sbjct: 190 IYLPISVPAIATVSLFTMVFHWNSWFDGMIYNNDARNYPLQTFLQTIVVQQDFSQITDAE 249 Query: 254 LANNPSMLEITGRSLRSAMILACTLPILLAYPFLQRFFVKGMLLGSVK 301 N ++ R++++A I LP+L+ YPF+Q++FVKG++LG+ K Sbjct: 250 TLRN-----LSQRTVQAAQIFIAALPMLIVYPFIQKYFVKGIVLGAEK 292 >BS_lplC [G] COG0395 ABC-type sugar transport system, permease component Length = 295 Score = 206 bits (523), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 116/304 (38%), Positives = 183/304 (60%), Gaps = 11/304 (3%) Query: 1 MKGVATMETANLSRRIFQIFNIIVLTFMAFLCLLPILNLVAVSFSSRSVVEANQVGLWPK 60 M + TM + R+F + NI+ L + + +LP L ++A SF++ + + ++PK Sbjct: 1 MAEIHTMHNTK-AGRVFDVCNILFLGGVGAITILPFLYIIAGSFATEAELAQRSFFIFPK 59 Query: 61 GLNLSSYEYIFSNSQFFKSLWITVQRTVFGLIVELSLTILVAYPLSKTNRVFRLRSMYVW 120 L +Y+Y+FS F +S+ +++ TV G V+L T +AYPL+K R + R++ + Sbjct: 60 TFTLDAYKYVFSTPTFLRSMGVSIFITVVGTAVQLFFTFTMAYPLAK--RHVKGRNLLLN 117 Query: 121 FFMVTMVFNGGLIPTYLVVNELHLVNSIWALILPEAIIMFNVLLLLNFFRAIPNELEEAA 180 + +M+F+GG+IPTYLVV L L+++ WALILP AI FN++++ NFF+ +P ELEE+A Sbjct: 118 LVIFSMLFSGGMIPTYLVVKSLGLLDTYWALILPMAINPFNLIIIKNFFQQLPRELEESA 177 Query: 181 LMDGAGWFVTLTRVYLPLSLPSLATITLFILVRHWNSWFDGLIYMNLPDQYPLMTYLQTM 240 +DG R+ LPLS P +AT LF V WN +F L+Y+N ++PL L+ + Sbjct: 178 KIDGCSEIGVFWRIALPLSKPVIATFALFYAVGIWNDFFHALLYINDSAKWPLQMVLRQV 237 Query: 241 VLNLDLSQLSSTALANN--PSMLEITGRSLRSAMILACTLPILLAYPFLQRFFVKGMLLG 298 + DL+ + + N P + ++ A+I+ TLPIL YPFLQ+ F KGML+G Sbjct: 238 TILSDLTATNGDTMQNAVPPE------QGIKLAVIVIATLPILAVYPFLQKHFAKGMLIG 291 Query: 299 SVKG 302 SVKG Sbjct: 292 SVKG 295 >BS_ytcP [G] COG0395 ABC-type sugar transport system, permease component Length = 286 Score = 204 bits (519), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 113/293 (38%), Positives = 187/293 (63%), Gaps = 18/293 (6%) Query: 18 QIFNIIVLTFM---AFLCLLPILNLVAVSFSSRSVVEANQVGLWPKGLNLSSYEYIFSNS 74 ++F++++ F+ A +C+LP ++++A SF++ V + + L P +L +Y YIFS Sbjct: 4 RLFDMLIYGFLLMFALICVLPFIHVIAASFATVEEVVSKKFILIPTTFSLDAYRYIFSTD 63 Query: 75 QFFKSLWITVQRTVFGLIVELSLTILVAYPLSKTNRVFRLRSMYVWFFMVTMVFNGGLIP 134 +KSL ++V TV G V + L+ L+AY LS+ + + R M++ F TM+F+GG+IP Sbjct: 64 IIYKSLLVSVFVTVIGTAVSMFLSSLMAYGLSRRDLIGRQPLMFLVVF--TMLFSGGMIP 121 Query: 135 TYLVVNELHLVNSIWALILPEAIIMFNVLLLLNFFRAIPNELEEAALMDGAGWFVTLTRV 194 T+LVV L L++S WALILP AI FN+++L NFF+ IP+ LEE+A +DG ++ Sbjct: 122 TFLVVKSLGLLDSYWALILPTAINAFNLIILKNFFQNIPSSLEESAKIDGCNDLGIFFKI 181 Query: 195 YLPLSLPSLATITLFILVRHWNSWFDGLIYMNLPDQYPLMTYLQTMV-----LNLDLSQL 249 LPLSLP++ATI+LF V +WN++ ++Y+N ++P+ L+ +V + D+S++ Sbjct: 182 VLPLSLPAIATISLFYAVTYWNTYMTAILYLNDSAKWPIQVLLRQIVIVSSGMQGDMSEM 241 Query: 250 SSTALANNPSMLEITGRSLRSAMILACTLPILLAYPFLQRFFVKGMLLGSVKG 302 S + ++++ A+I+ T+P+LL YPF+Q+ F KG LLGSVKG Sbjct: 242 GSGSPPPE--------QTIKMAVIVVATIPVLLVYPFIQKHFAKGALLGSVKG 286 >BH0481 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 116/301 (38%), Positives = 183/301 (60%), Gaps = 14/301 (4%) Query: 7 METANLSRRIFQIFNIIVLTFMAFLCLLPILNLVAVSFSSRSVVEANQVGLWPKGLNLSS 66 + +L R+F IFN + L + +C LP +++VA SF+S V + L+P +L + Sbjct: 2 VHDQSLGSRVFNIFNYLFLFLFSMICFLPFVHIVAGSFASVEEVLQKRFILFPTTFSLDA 61 Query: 67 YEYIFSNSQFFKSLWITVQRTVFGLIVELSLTILVAYPLSKTNRVFRLRSMYVWFFMVTM 126 Y YIFS F+SL I++ TV G + LT L+AY LS+ + R M++ F TM Sbjct: 62 YRYIFSTDIIFRSLIISILVTVVGTGFSMFLTSLMAYGLSRKDLDGRRVLMFLVVF--TM 119 Query: 127 VFNGGLIPTYLVVNELHLVNSIWALILPEAIIMFNVLLLLNFFRAIPNELEEAALMDGAG 186 +F+GG+IPT+LVV L L+++ WALI+P AI FN+++L NFF+ IP LEE+A +DG Sbjct: 120 LFSGGMIPTFLVVRSLGLLDTYWALIIPTAINAFNLIILKNFFQNIPESLEESAKIDGCN 179 Query: 187 WFVTLTRVYLPLSLPSLATITLFILVRHWNSWFDGLIYMNLPDQYPLMTYLQTMV----- 241 R+ PLS+P++ATI+LF V +WN++ ++Y+N +P+ L+ +V Sbjct: 180 DVGIFFRIVFPLSMPAIATISLFYAVTYWNTFMQAILYLNDSSMWPIQVLLRQIVIMSSG 239 Query: 242 LNLDLSQLSSTALANNPSMLEITGRSLRSAMILACTLPILLAYPFLQRFFVKGMLLGSVK 301 + DL++L + P ++++ A+I+ T+P+L+ YPF+Q+ F KG LLGSVK Sbjct: 240 MQGDLTELGA-GFVMPPE------QTIKMAVIVVATIPVLIVYPFIQKHFAKGALLGSVK 292 Query: 302 G 302 G Sbjct: 293 G 293 >lin2116 [G] COG0395 ABC-type sugar transport system, permease component Length = 323 Score = 191 bits (486), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 102/282 (36%), Positives = 171/282 (60%), Gaps = 5/282 (1%) Query: 23 IVLTFMAFLCLLPILNLVAVSFSSRSVVEANQVGLWPKGLNLSSYEYIFS-NSQFFKSLW 81 ++L F+A +C+ P L ++ +SFSS + + AN L PK ++ +YEY++ Q +S Sbjct: 43 VMLAFLALICIFPFLYIIVISFSSETSLAANGFQLIPKEWSMEAYEYLWKMKGQLLQSYG 102 Query: 82 ITVQRTVFGLIVELSLTILVAYPLSKTNRVFRLRSMYVWFFMVTMVFNGGLIPTYLVVNE 141 IT+ TV G + +++ L +Y +S+ +R + ++ FF TM+F+GG++P Y+V+ + Sbjct: 103 ITIVVTVIGTVCSVAMIALYSYAISRPQFKYRRQFTFIAFF--TMLFSGGMVPAYIVMTQ 160 Query: 142 -LHLVNSIWALILPEAIIMFNVLLLLNFF-RAIPNELEEAALMDGAGWFVTLTRVYLPLS 199 LHL NSIWA+ILP A+ F ++++ FF R+IP + EAA ++GAG ++ +PLS Sbjct: 161 FLHLRNSIWAMILPLAMNAFYIMIMRTFFLRSIPEPILEAARIEGAGELRIFLQMVVPLS 220 Query: 200 LPSLATITLFILVRHWNSWFDGLIYMNLPDQYPLMTYLQTMVLNLDLSQLSSTALANNPS 259 LP LATI LF + +WN WF +Y++ P+ PL + L + NL+ + +S + Sbjct: 221 LPGLATIALFSTLGYWNDWFQASLYIDNPNLVPLQSLLMKIENNLEFMRQNSEIAYTAGA 280 Query: 260 MLEITGRSLRSAMILACTLPILLAYPFLQRFFVKGMLLGSVK 301 I + AM++ TLPI + YPF Q++F+ G+ +G VK Sbjct: 281 FKSIPQDGAKMAMVVISTLPIAITYPFFQKYFISGLTIGGVK 322 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.330 0.141 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,704,727 Number of extensions: 705883 Number of successful extensions: 3424 Number of sequences better than 1.0e-05: 160 Number of HSP's gapped: 3247 Number of HSP's successfully gapped: 160 Length of query: 302 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 196 Effective length of database: 26,153,027 Effective search space: 5125993292 Effective search space used: 5125993292 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)