BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0571.0014.p (285 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1065 [G] COG4209 ABC-type polysaccharide transport system, per... 320 1e-87 BH2112 [G] COG4209 ABC-type polysaccharide transport system, per... 228 9e-60 BH1911 [G] COG4209 ABC-type polysaccharide transport system, per... 218 7e-57 BS_lplB [G] COG4209 ABC-type polysaccharide transport system, pe... 212 6e-55 BH0484 [G] COG4209 ABC-type polysaccharide transport system, per... 201 1e-51 >BH1065 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 317 Score = 320 bits (821), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 151/285 (52%), Positives = 214/285 (75%) Query: 1 MLLPAVIITIIFRYVPIGGLSVAFMDYQTVFGFFDQEWVGWDNFTYIFNLPGFYNVLWNT 60 +L+PA+++ +IF+Y P+ G+ +AF DY+ GF EWVG +F +F V+WNT Sbjct: 33 LLIPALVLALIFQYGPMFGIVMAFQDYKPWLGFTGSEWVGLQHFITMFEYDYAKQVIWNT 92 Query: 61 FFIAVMKILGNLIVPVAFALLLNEVRHKRYKQSVQTLLYLPHFLSWVALAGVLVDILSPS 120 I+V+K++ LIVP+ ALLLNE+ K++VQT++YLP+FLSWV L G+L+D+LSP Sbjct: 93 LVISVLKMIFGLIVPIIVALLLNEMYQMVVKRTVQTIIYLPYFLSWVILGGILIDVLSPD 152 Query: 121 SGILNNVLGFFGVKPIFFLGNPDIFPYTLVITDVWKEFGWGTIIYLAAITTIDPTQYEAA 180 GI+N LG FG+ PIFFLG+ D F T+VI+D+WKE G+ TI++LAAIT ++P YEAA Sbjct: 153 GGIVNQALGLFGIDPIFFLGSNDWFRTTVVISDLWKETGFNTIVFLAAITAVNPNLYEAA 212 Query: 181 IIDGAGRWKQTMHVTLPALAPVIILLTVLGIGNVLQAGFDQVYNLYSPQVYSTGDIIDTL 240 ++DGA RWKQT+H+TLPA+ P+II++ L +GN+L AGFDQ++NLY+P VY TGDIIDT Sbjct: 213 VVDGANRWKQTLHITLPAMLPIIIVVATLSLGNILNAGFDQIFNLYNPLVYQTGDIIDTY 272 Query: 241 VYRIGIVDVQFGPAAAVGFFKSVVSFILIVTGYRLAHRWTGYRIF 285 VYR+ +V+ F AVG FKS++S +LI+ GYRLA+++ +RIF Sbjct: 273 VYRVSLVNGDFSYGTAVGLFKSLISLVLIIIGYRLAYKYANWRIF 317 >BH2112 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 337 Score = 228 bits (581), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 124/287 (43%), Positives = 182/287 (63%), Gaps = 2/287 (0%) Query: 1 MLLPAVIITIIFRYVPIGGLSVAFMDYQTVFGFFDQEWVGWDNFTYIFNLPGFYNVLWNT 60 M LP +I IIFRYVP+ G S+AF D++ FDQ+W G+ +FT++F P F+ VL NT Sbjct: 51 MSLPFLIWLIIFRYVPLYGWSIAFQDFRPARPIFDQDWAGFKHFTFLFTDPRFFEVLRNT 110 Query: 61 FFIAVMKILGNLIVPVAFALLLNEVRHKRYKQSVQTLLYLPHFLSWVALAGVLVDILSPS 120 ++++ ++ + + A+LLNE+R+ +K+ VQT+ Y+PHFLSWV AG++ LS Sbjct: 111 LAMSLINLVLGFVTAIGLAILLNELRNLTFKRVVQTISYMPHFLSWVVAAGLVSAALSIE 170 Query: 121 SGILNNVLGFFGV--KPIFFLGNPDIFPYTLVITDVWKEFGWGTIIYLAAITTIDPTQYE 178 +GI+N VL G+ +PI +LG + F + +DVWK GW TIIYLAAIT ID QYE Sbjct: 171 NGIINIVLMKLGMISEPIMWLGVGEYFWGIIGASDVWKNVGWNTIIYLAAITMIDTEQYE 230 Query: 179 AAIIDGAGRWKQTMHVTLPALAPVIILLTVLGIGNVLQAGFDQVYNLYSPQVYSTGDIID 238 AA IDGA R ++ ++TLP + PVI++L ++ +G +L++GF+ Y L +P + +D Sbjct: 231 AAEIDGATRLQRIWYITLPGMRPVIVILLIMNLGYILESGFEAQYLLMNPMNMDFAENLD 290 Query: 239 TLVYRIGIVDVQFGPAAAVGFFKSVVSFILIVTGYRLAHRWTGYRIF 285 V R GI F A A G FK+VVSFI + + +A R R+F Sbjct: 291 IFVLRYGINMGNFSLATAAGIFKTVVSFIFLFSANHIAKRLGEARLF 337 >BH1911 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 218 bits (556), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 111/286 (38%), Positives = 178/286 (62%), Gaps = 2/286 (0%) Query: 1 MLLPAVIITIIFRYVPIGGLSVAFMDYQTVFGFFDQEWVGWDNFTYIFNLPGFYNVLWNT 60 M LP V ++F Y P+ G ++AF +++ FF+QEWVG +F +F FY VL NT Sbjct: 33 MSLPFVAWVLVFNYFPLWGWTMAFQNFRPGLSFFEQEWVGLQHFIELFQDNRFYLVLRNT 92 Query: 61 FFIAVMKILGNLIVPVAFALLLNEVRHKRYKQSVQTLLYLPHFLSWVALAGVLVDILSPS 120 +++M ++ +P+ FA+LLNEVRH +K++VQT+ YLPHF+SWV +AG++ +LS Sbjct: 93 LAMSIMGLIVGFTMPILFAVLLNEVRHMVFKRTVQTVSYLPHFVSWVVVAGIVTKMLSID 152 Query: 121 SGILNNVLGFFGV--KPIFFLGNPDIFPYTLVITDVWKEFGWGTIIYLAAITTIDPTQYE 178 GI+N +L FG +P+ F+ + F + ++D+WKE GW +II+LAA+ IDP YE Sbjct: 153 GGIVNQLLMAFGFVDQPVQFMAKGEWFWVIVTLSDLWKEMGWNSIIFLAAMAGIDPQLYE 212 Query: 179 AAIIDGAGRWKQTMHVTLPALAPVIILLTVLGIGNVLQAGFDQVYNLYSPQVYSTGDIID 238 AA +DGA RW+Q H+TLP + P I+++ +L IG+++ GF++ + L +P V +++D Sbjct: 213 AAKVDGASRWRQIWHITLPGIRPTILVILILSIGHLMAIGFEKQFLLGNPLVVDYSEVLD 272 Query: 239 TLVYRIGIVDVQFGPAAAVGFFKSVVSFILIVTGYRLAHRWTGYRI 284 G+ ++ A+G F SVV IL+ + R+T + Sbjct: 273 LYALNYGLGLGRYSYGTAIGIFNSVVCIILLFLANGIFKRFTNQSV 318 >BS_lplB [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 318 Score = 212 bits (539), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 114/269 (42%), Positives = 167/269 (62%) Query: 10 IIFRYVPIGGLSVAFMDYQTVFGFFDQEWVGWDNFTYIFNLPGFYNVLWNTFFIAVMKIL 69 +IF+Y+P+ G+ +AF DY GF+ EWVG+D F F P F+ +L NT +A + +L Sbjct: 43 LIFKYLPMWGVLIAFKDYSPYLGFWKSEWVGFDYFKDFFMNPDFFRLLRNTLMLASLDLL 102 Query: 70 GNLIVPVAFALLLNEVRHKRYKQSVQTLLYLPHFLSWVALAGVLVDILSPSSGILNNVLG 129 P+ ALLLNEVR YK+ +QT +Y+PHF+SW + + + +G++N ++ Sbjct: 103 FAFPAPLILALLLNEVRKAVYKRCIQTFIYVPHFVSWTIVVSITFVFFTVDTGVINKLIM 162 Query: 130 FFGVKPIFFLGNPDIFPYTLVITDVWKEFGWGTIIYLAAITTIDPTQYEAAIIDGAGRWK 189 + I FL + D F +V+ +WKE GWGTI++LAA+ T+D QYEAAI+DGAGR++ Sbjct: 163 SLTGEQISFLSDADWFRPMIVMQSIWKETGWGTILFLAALATVDQEQYEAAIMDGAGRFR 222 Query: 190 QTMHVTLPALAPVIILLTVLGIGNVLQAGFDQVYNLYSPQVYSTGDIIDTLVYRIGIVDV 249 + H+TLPA+ II+L +L IG+ L GF+QVY + + S DI DT VY +GI Sbjct: 223 RMWHITLPAIRSTIIVLLILRIGSFLNLGFEQVYLMTNSLNRSVADIFDTYVYMMGITQG 282 Query: 250 QFGPAAAVGFFKSVVSFILIVTGYRLAHR 278 + + AVG FKSVV ILI +A + Sbjct: 283 AYSYSTAVGLFKSVVGIILIFGANYIAKK 311 >BH0484 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 325 Score = 201 bits (511), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 110/278 (39%), Positives = 174/278 (62%) Query: 1 MLLPAVIITIIFRYVPIGGLSVAFMDYQTVFGFFDQEWVGWDNFTYIFNLPGFYNVLWNT 60 M+LP ++ +IF+YVP+ GL +AF DYQ G EWVG+ +F +F P F+ +L NT Sbjct: 41 MILPGLVYFLIFKYVPMWGLIIAFQDYQPFLGVTGSEWVGFKHFERLFTEPTFFQLLRNT 100 Query: 61 FFIAVMKILGNLIVPVAFALLLNEVRHKRYKQSVQTLLYLPHFLSWVALAGVLVDILSPS 120 + + ++ VP+ A+LLNE+R +K+ VQT++Y+PHF+SWV + + + + Sbjct: 101 LVLFLYNLIFFFPVPIILAVLLNEIRLMVFKRFVQTMIYIPHFMSWVIVVSLTYVLFTTD 160 Query: 121 SGILNNVLGFFGVKPIFFLGNPDIFPYTLVITDVWKEFGWGTIIYLAAITTIDPTQYEAA 180 G++N ++ K + FL + D F ++ +W+E GW TIIY AAI IDP+ YEAA Sbjct: 161 GGVINEIIYSITGKNVNFLMSEDWFRPLYILQVIWREAGWATIIYFAAIAAIDPSLYEAA 220 Query: 181 IIDGAGRWKQTMHVTLPALAPVIILLTVLGIGNVLQAGFDQVYNLYSPQVYSTGDIIDTL 240 +DGA R++Q H+TLPA+ VI++L +L IG++L+ GF+ V+ + + +I DT Sbjct: 221 KMDGANRFRQIWHITLPAIRSVIVVLLILKIGDILELGFEHVFLMLNAMNREVAEIFDTY 280 Query: 241 VYRIGIVDVQFGPAAAVGFFKSVVSFILIVTGYRLAHR 278 VY G+ + QF + AVGFFKS+V I+++ LA + Sbjct: 281 VYTAGLKEGQFSYSTAVGFFKSIVGLIMVMLANWLAKK 318 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.330 0.147 0.470 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,917,843 Number of extensions: 978663 Number of successful extensions: 3035 Number of sequences better than 1.0e-05: 156 Number of HSP's gapped: 2912 Number of HSP's successfully gapped: 156 Length of query: 285 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 180 Effective length of database: 26,268,361 Effective search space: 4728304980 Effective search space used: 4728304980 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)