BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0571.0013.p (325 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH2109 [T] COG4753 Response regulator containing CheY-like recei... 90 5e-18 BH3842 [T] COG4753 Response regulator containing CheY-like recei... 84 3e-16 BH0793 [T] COG4753 Response regulator containing CheY-like recei... 83 6e-16 BH3679 [T] COG4753 Response regulator containing CheY-like recei... 82 9e-16 BS_yesS [K] COG2207 AraC-type DNA-binding domain-containing prot... 82 2e-15 >BH2109 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 525 Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 72/117 (61%), Gaps = 3/117 (2%) Query: 209 LCDAAEIV---RKDNTESTIARIKDYINQHLSSDLSLTALGKATGFNPSYLSRMFKRDEG 265 + +AA I+ RK+N +S I ++K YI H ++SL ++ NP Y+ ++FK+ G Sbjct: 404 VLEAAVIIQELRKENMKSDIYKVKTYIENHYHENISLKSIASLFYMNPVYMGQLFKKTFG 463 Query: 266 TGLHDYITDCRINLAKSLLMNTNMKIYEIAQKSGYDNSNYFIRTFKLLTGQTPQEYR 322 +Y+ R+N AK LL T+M++YE+A++ G+ +++YF+ F+ + TP EYR Sbjct: 464 VYFKEYLLKLRMNEAKKLLRQTDMRVYEVAERVGFGSTDYFVTQFEKINKMTPTEYR 520 >BH3842 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 530 Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 21/211 (9%) Query: 118 ILEAHLQNGHQESFLKMMNELCQVLSGILSRHSLHAMELYLSVCRVLLTYINENQLSGKL 177 ++EA +++G E L+ + Q + S+H LH M YL ++L G+L Sbjct: 319 LIEA-IKSGDGEKALQAFDHYVQAILRC-SKHPLHDMRKYLQQLFIIL---------GRL 367 Query: 178 SPGLDLSLLYNPGSMTDWAERAHFLSKTAAALCDAAEIVRK------DNTESTIARIKDY 231 + L + D+A + T + IVR + +S + +DY Sbjct: 368 LNEMGLHW----ETAQDFARFSTVHQVTEHGKSEILHIVRTLQEWRTTDEQSLMLLARDY 423 Query: 232 INQHLSSDLSLTALGKATGFNPSYLSRMFKRDEGTGLHDYITDCRINLAKSLLMNTNMKI 291 ++ H L+L L K G +P Y+S++FK +Y+T R+ AK LL T + Sbjct: 424 VHDHFREPLTLDDLAKHIGLSPYYVSKLFKERFDLTFSEYVTQLRVEHAKQLLSLTQKSL 483 Query: 292 YEIAQKSGYDNSNYFIRTFKLLTGQTPQEYR 322 EI + GY + NYF R FK LTG++P +YR Sbjct: 484 KEITYEIGYKDPNYFSRVFKKLTGKSPSDYR 514 >BH0793 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 508 Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 39/103 (37%), Positives = 58/103 (56%) Query: 220 NTESTIARIKDYINQHLSSDLSLTALGKATGFNPSYLSRMFKRDEGTGLHDYITDCRINL 279 N I + +I+QH S DLSL LG + NP YL ++F+R+ G Y+ RI+ Sbjct: 400 NYSPIIQTVLQHIHQHFSQDLSLKTLGHSFHINPIYLGQLFQREVGCSFTKYLNQLRIDR 459 Query: 280 AKSLLMNTNMKIYEIAQKSGYDNSNYFIRTFKLLTGQTPQEYR 322 AK LL+N+ + +I +K GY ++ YF + FK TP E+R Sbjct: 460 AKKLLLNSYDRAGQIGKKVGYGDATYFYKQFKKYEAMTPTEWR 502 >BH3679 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 257 Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 44/112 (39%), Positives = 63/112 (56%), Gaps = 1/112 (0%) Query: 211 DAAEIVRKDNTESTIARIKDYINQHLSSDLSLTALGKATGFNPSYLSRMFKRDEGTGLHD 270 DA E R +++S I YI+ HL + L + K+ NPSYLS +FK + Sbjct: 143 DAIEKERLSSSDS-IHEALHYIDAHLDQKIGLKDVAKSVHLNPSYLSALFKEKTNMTFSE 201 Query: 271 YITDCRINLAKSLLMNTNMKIYEIAQKSGYDNSNYFIRTFKLLTGQTPQEYR 322 Y+T R+ AK LL++T+ I +IA+K GY + YFI+ FK G TP +YR Sbjct: 202 YLTRKRLQHAKHLLVSTDRPISDIAEKCGYQTAKYFIKIFKEHEGMTPTQYR 253 >BS_yesS [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 761 Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 14/164 (8%) Query: 163 VLLTYINENQLSGKLSPGLDLSLLYNPGSMTDW---AERAHFLSKTAAALCDAAEIVRKD 219 +L + +N ++L +P LD+S L P W +LSK RK+ Sbjct: 601 ILHSGLNPSELFQHRNPFLDISELREPNEAAAWLMDVVVTPYLSKLEG---------RKN 651 Query: 220 NTESTIA-RIKDYINQHLSSDLSLTALGKATGFNPSYLSRMFKRDEGTGLHDYITDCRIN 278 + +A R+ I++ +D+SL + A G N LS+ FK+ G DY+T RI Sbjct: 652 RQQKQLAERVIAMIHEQYMADISLESCADALGMNSYTLSKAFKQVTGINFIDYVTQIRIE 711 Query: 279 LAKSLLMNTNMKIYEIAQKSGYDNSNYFIRTFKLLTGQTPQEYR 322 AK LL+NTN KI++++++ GY + NYF R FK G P +R Sbjct: 712 KAKELLVNTNKKIHDVSEEVGYRH-NYFNRIFKKQVGMPPGVFR 754 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.133 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,971,467 Number of extensions: 905178 Number of successful extensions: 2341 Number of sequences better than 1.0e-05: 79 Number of HSP's gapped: 2342 Number of HSP's successfully gapped: 79 Length of query: 325 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 218 Effective length of database: 26,037,693 Effective search space: 5676217074 Effective search space used: 5676217074 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 116 (49.3 bits)