BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0571.0012.p
         (209 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH1051 [TK] COG2197 Response regulator containing a CheY-like re...    84   2e-16
yehT [KT] COG3279 Response regulator of the LytR/AlgR family           81   1e-15
ZyehT [KT] COG3279 Response regulator of the LytR/AlgR family          81   1e-15
ECs2936 [KT] COG3279 Response regulator of the LytR/AlgR family        81   1e-15

>BH1051 [TK] COG2197 Response regulator containing a CheY-like receiver
           domain and an HTH DNA-binding domain
          Length = 212

 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 95/170 (55%), Gaps = 23/170 (13%)

Query: 8   LLIVDDEPVIAGGLQMLFEEQQQLKLDVSATCSSTEAIELFERLRSDAVLLDIQMPGISG 67
           LL+ +D+ ++  GL+M+ E+ + L + ++   +  EA+E +ER   D VL+D++MP  +G
Sbjct: 4   LLLAEDQHLVRQGLKMMIEQDETLHV-IAEASNGQEAVEAYERYLIDLVLMDVRMPSKTG 62

Query: 68  LELAGRMKSFHPEVKIIFLTGYDQFDYAYKAIKQDAFDYVLKTEGDDKVIAAVTAALD-- 125
           LE    +++ HPE KI+ LT +   +YA +A+K  A  Y+LK    D++I ++ +AL+  
Sbjct: 63  LEATKEIRARHPEAKILILTTFADDEYALEALKYGACGYLLKDADADRLIHSIKSALNGG 122

Query: 126 -------------RLEYEQKLQMEYRQAQIQLSSMYPVFRQNLLVALLGE 162
                        RL ++Q  ++E R A++         R+  +V L+GE
Sbjct: 123 MSLDDTVAAKVLPRLLHQQTGEVEERTARL-------TKRELAVVKLVGE 165


>yehT [KT] COG3279 Response regulator of the LytR/AlgR family
          Length = 244

 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 4/103 (3%)

Query: 7   KLLIVDDEPVIAGGLQMLFEEQQQLKLDVSATCSSTEAIELFERLRSDAVLLDIQMPGIS 66
           K+LIVDDEP+    L++  +EQ  +++ V    ++ E I    +LR D + LDIQMP IS
Sbjct: 8   KVLIVDDEPLARENLRVFLQEQSDIEI-VGECSNAVEGIGAVHKLRPDVLFLDIQMPRIS 66

Query: 67  GLELAGRMKSFHPEVKIIFLTGYDQFDYAYKAIKQDAFDYVLK 109
           GLE+ G +   H    I+FLT +D  +YA KA ++ AFDY+LK
Sbjct: 67  GLEMVGMLDPEH-RPYIVFLTAFD--EYAIKAFEEHAFDYLLK 106


>ZyehT [KT] COG3279 Response regulator of the LytR/AlgR family
          Length = 244

 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 4/103 (3%)

Query: 7   KLLIVDDEPVIAGGLQMLFEEQQQLKLDVSATCSSTEAIELFERLRSDAVLLDIQMPGIS 66
           K+LIVDDEP+    L++  +EQ  +++ V    ++ E I    +LR D + LDIQMP IS
Sbjct: 8   KVLIVDDEPLARENLRVFLQEQSDIEI-VGECSNAVEGIGAVHKLRPDVLFLDIQMPRIS 66

Query: 67  GLELAGRMKSFHPEVKIIFLTGYDQFDYAYKAIKQDAFDYVLK 109
           GLE+ G +   H    I+FLT +D  +YA KA ++ AFDY+LK
Sbjct: 67  GLEMVGMLDPEH-RPYIVFLTAFD--EYAIKAFEEHAFDYLLK 106



 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 4/103 (3%)

Query: 7   KLLIVDDEPVIAGGLQMLFEEQQQLKLDVSATCSSTEAIELFERLRSDAVLLDIQMPGIS 66
           K+LIVDDEP+    L++  +EQ  +++ V    ++ E I    +LR D + LDIQMP IS
Sbjct: 8   KVLIVDDEPLARENLRVFLQEQSDIEI-VGECSNAVEGIGAVHKLRPDVLFLDIQMPRIS 66

Query: 67  GLELAGRMKSFHPEVKIIFLTGYDQFDYAYKAIKQDAFDYVLK 109
           GLE+ G +   H    I+FLT +D  +YA KA ++ AFDY+LK
Sbjct: 67  GLEMVGMLDPEH-RPYIVFLTAFD--EYAIKAFEEHAFDYLLK 106


>ECs2936 [KT] COG3279 Response regulator of the LytR/AlgR family
          Length = 244

 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 4/103 (3%)

Query: 7   KLLIVDDEPVIAGGLQMLFEEQQQLKLDVSATCSSTEAIELFERLRSDAVLLDIQMPGIS 66
           K+LIVDDEP+    L++  +EQ  +++ V    ++ E I    +LR D + LDIQMP IS
Sbjct: 8   KVLIVDDEPLARENLRVFLQEQSDIEI-VGECSNAVEGIGAVHKLRPDVLFLDIQMPRIS 66

Query: 67  GLELAGRMKSFHPEVKIIFLTGYDQFDYAYKAIKQDAFDYVLK 109
           GLE+ G +   H    I+FLT +D  +YA KA ++ AFDY+LK
Sbjct: 67  GLEMVGMLDPEH-RPYIVFLTAFD--EYAIKAFEEHAFDYLLK 106


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.138    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 13,877,312
Number of extensions: 481242
Number of successful extensions: 2923
Number of sequences better than 1.0e-05: 250
Number of HSP's gapped: 2984
Number of HSP's successfully gapped: 250
Length of query: 209
Length of database: 38,378,431
Length adjustment: 102
Effective length of query: 107
Effective length of database: 26,614,363
Effective search space: 2847736841
Effective search space used: 2847736841
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)