BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0569.0018.p
         (203 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

all3321 [S] COG1652 Uncharacterized protein containing LysM domain     66   3e-11
mlr6557 [S] COG1652 Uncharacterized protein containing LysM domain     59   4e-09

>all3321 [S] COG1652 Uncharacterized protein containing LysM domain
          Length = 234

 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 94/197 (47%), Gaps = 27/197 (13%)

Query: 14  VGAIEVMFNPNEYTVSFEGKYTGE------KNNKQFQITETPELKVSLFYDTY------- 60
           +G  E+  NP +++ SF+ +Y  E      +N+ +F+ T+  ELK+   +D         
Sbjct: 20  LGEFELPINPEQFSQSFKVEYNREQAQGSQRNDPEFKFTKPEELKLDFTFDGTGVVPVNN 79

Query: 61  ----EKRTDVRKKTKLLTSLLDPKVSGKNTKKPPVCLFVWGGFTY------RGLLSKIEQ 110
               E   DV  + ++   L+    S   T KP     +WG F++        LL+ ++ 
Sbjct: 80  GKPGEFHQDVADQVRVFLDLVYSMNS--ETHKPNFLRLIWGDFSFGEKNGFDCLLTDLQI 137

Query: 111 KFTMFMENGTPVRSLLDVTFIT--EESDKTVEDNRGLNACRKLWVVKSGDRLDLIANEAL 168
            +T+F + G P+R+ L  TF +  E++ +  E+ +          VK+GD L L+ +   
Sbjct: 138 NYTLFDQTGKPLRAKLSTTFTSYVEQNRRVREEGKQSPDVTHQRKVKAGDTLPLMTHRIY 197

Query: 169 KEPLAWRRIAELNKIVN 185
            +P  + +IA++N ++N
Sbjct: 198 GDPAYYLQIAKVNGLIN 214


>mlr6557 [S] COG1652 Uncharacterized protein containing LysM domain
          Length = 232

 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 89/219 (40%), Gaps = 52/219 (23%)

Query: 3   EKAKIIPLDMPVGA-----IEVMFNPNEYTVSFEGKYTGEKNNK------QFQITETPEL 51
           EKA I  LD   GA     I V+FNP EY+      Y             QF   E  +L
Sbjct: 7   EKAIITVLD---GADKGKVITVLFNPAEYSFDRTNSYKATAIPGLGSPILQFVNGECDQL 63

Query: 52  KVSLFYDTY-----------EKRTDVRKKTKLLTSLLDPKVSGKNTKKPPVCLFVWGGFT 100
            + LF D +           ++R  V K+ K ++ LL+     ++   P    F WG   
Sbjct: 64  SMELFLDDFTDPEGPTSLRQKERDPVAKRLKDISKLLE---IDRDLHAPAPVRFNWGPME 120

Query: 101 YRGLLSKIEQKFTMFMENGTPVRSLLDVTF-------------ITEESDKTVEDNRGLNA 147
           +  ++ K+ +K T F  +G P R+ L+VTF               E SDKT         
Sbjct: 121 FSAVIEKLGRKVTKFHSDGAPARAALNVTFKEYRTLRQQLEAPRRESSDKT--------- 171

Query: 148 CRKLWVVKSGDRLDLIANEALKEPLAWRRIAELNKIVNP 186
             K  VV   + L  IA +   +P  W RIA+ N I +P
Sbjct: 172 --KRRVVVGRESLWSIAAKEYDDPNEWVRIADANDIDDP 208


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 15,176,247
Number of extensions: 602914
Number of successful extensions: 1571
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1568
Number of HSP's successfully gapped: 2
Length of query: 203
Length of database: 38,378,431
Length adjustment: 101
Effective length of query: 102
Effective length of database: 26,729,697
Effective search space: 2726429094
Effective search space used: 2726429094
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)