BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0569.0016.p (240 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr6559 [S] COG3501 Uncharacterized protein conserved in bacteria 135 4e-32 VCA0123_1 [S] COG3501 Uncharacterized protein conserved in bacteria 67 2e-11 VC1416_1 [S] COG3501 Uncharacterized protein conserved in bacteria 67 3e-11 VCA0018 [S] COG3501 Uncharacterized protein conserved in bacteria 62 6e-10 YPO0507 [S] COG3501 Uncharacterized protein conserved in bacteria 58 2e-08 >mlr6559 [S] COG3501 Uncharacterized protein conserved in bacteria Length = 213 Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 87/224 (38%), Positives = 125/224 (55%), Gaps = 29/224 (12%) Query: 18 GRIFGVMVGIVINNDSANHADKPGPGRVKVKIPLMGMP-ESNWARMASWMAGKERGAFCL 76 G + GV + +V +N+ D RVKV+ P P ES WAR+A MAG +RG + Sbjct: 18 GVVKGVAIALVTHNN-----DPENLCRVKVRYPWHEKPTESYWARLAMPMAGDQRGLVLI 72 Query: 77 PEVDDEVLVVFENGDVNRPYVIGSLWNGKDTPPETNKDGKNNIRMFKSRSGHILQFADTE 136 PEV DEV+V FE D+ PYV+G+LWNGKD PP N DGKN+ R +SR H L F D Sbjct: 73 PEVGDEVVVGFEREDLRFPYVLGALWNGKDKPPHANSDGKNDKRTLQSRKKHYLLF-DDG 131 Query: 137 GKENITLTSAKGHVIRLDDKSGAEQIQIMDKSGKNKIVIDSKANKLSVLSGQDIEISAPG 196 + + L KG + DD + I + D++G N I IDS++ +S+ + Sbjct: 132 SRGVVELAHEKGRKVVFDD----DGIALQDENG-NSIRIDSRSGAVSIEA---------K 177 Query: 197 GKLSLSAKTIEMKSSADTRIEASAGMEVKAAASMTIKGATVNIN 240 G LS+ A I IE++ +++KA A+++++GA VNIN Sbjct: 178 GNLSIKAAAIT--------IESNGTLDLKAVATLSVRGALVNIN 213 >VCA0123_1 [S] COG3501 Uncharacterized protein conserved in bacteria Length = 719 Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/238 (28%), Positives = 97/238 (40%), Gaps = 48/238 (20%) Query: 43 GRVKVKIPLMGMPESN-----WARMASWMAGKERGAFCLPEVDDEVLVVFENGDVNRPYV 97 GRVKV P SN W R+A AG + G+ +P V EV+V F NGD ++P + Sbjct: 394 GRVKVHFPWDRYSSSNEKSSCWVRVAQEWAGSQYGSMAIPRVGHEVIVSFLNGDPDQPII 453 Query: 98 IGSLWNGKDTPPETNKDGKNNIRM----FKSRSGHILQFADTEGKENITLTSAK------ 147 G ++ +T P D K + + + + L F D G E I L + K Sbjct: 454 TGRTYHATNTAPYALPDHKTKTVLRTETHQGQGYNELSFEDQAGSEQILLHAQKDWDALI 513 Query: 148 ----GHVIRLD-----DKSGAEQIQ-----IMDKSGKNKIVIDSKAN---KLSVLSGQDI 190 VIR D D +IQ ++ ++KI +DS L GQ I Sbjct: 514 EHDHTEVIRHDQHLTVDNDRFTRIQRNQHLTVEGEVRSKIALDSSHEVGASLQHKVGQRI 573 Query: 191 EISAPGGKLSLSAKTIEMKSSADTRIEASAGMEVKAAASMT--------IKGATVNIN 240 + A K I +KS A +EA A + +KA S + G +N+N Sbjct: 574 AVEA--------GKEISLKSGAKIVVEAGAELTLKAGGSFVKVDAGGVHLVGPAINLN 623 >VC1416_1 [S] COG3501 Uncharacterized protein conserved in bacteria Length = 716 Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 97/236 (41%), Gaps = 44/236 (18%) Query: 43 GRVKVKIPLMGMPESN-----WARMASWMAGKERGAFCLPEVDDEVLVVFENGDVNRPYV 97 GRVK+ P N W R++ AG + G +P + EV+V F NGD ++P + Sbjct: 394 GRVKIHFPWDRYSNGNEQSSCWVRVSQGWAGSQYGFIAIPRIGHEVIVEFLNGDPDQPII 453 Query: 98 IGSLWNGKDTPPETNKDGKNNIRM----FKSRSGHILQFADTEGKENITLTSAKGH---- 149 G ++ +TPP T + K + + + L F D GKE I L + K Sbjct: 454 TGRTYHATNTPPYTLPEHKTKTVLRTETHQGEGFNELSFEDQAGKEQIYLHAQKDFDGLI 513 Query: 150 ------VIRLDDKSGAEQIQIMDKSGKNKIVIDSKANKLSVLSGQDIEISAPGGKLSLSA 203 VIR D E Q + ++ ++ + ++G+ + +S G SL Sbjct: 514 ENDHTTVIRHDHHLTVENDQFTQIKHNQHLTVEWESRE--AVTGEQV-LSIEG---SLHV 567 Query: 204 KT-----------IEMKSSADTRIEASAGMEVKAAASMT--------IKGATVNIN 240 KT I +K+ IEA + + VKA S + GA VN+N Sbjct: 568 KTGKVWVNEAGTEIHVKAGQKVVIEAGSEITVKAGGSFVKVDPAGVHLSGALVNLN 623 >VCA0018 [S] COG3501 Uncharacterized protein conserved in bacteria Length = 694 Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 54/213 (25%), Positives = 87/213 (40%), Gaps = 26/213 (12%) Query: 43 GRVKVKIPLMGMPESN-----WARMASWMAGKERGAFCLPEVDDEVLVVFENGDVNRPYV 97 GRVK+ P N W R++ AG + G +P + EV+V F NGD ++P + Sbjct: 394 GRVKIHFPWDRYSNGNEQSSCWVRVSQGWAGSQYGFIAIPRIGHEVIVSFLNGDPDQPII 453 Query: 98 IGSLWNGKDTPPETNKDGKNNIRM----FKSRSGHILQFADTEGKENITLTSAKGH---- 149 G ++ +TPP T + K + + + L F D GKE I L + K Sbjct: 454 TGRTYHATNTPPYTLPEHKTKTVLRTETHQGEGFNELSFEDQAGKEQIYLHAQKDFDGLI 513 Query: 150 ------VIRLDDKSGAEQIQIMDKSGKNKIVIDSKANKLSVLSGQDIEISAPGGKLS--L 201 VIR D E Q + ++ ++ L L S GG L + Sbjct: 514 ENDHTTVIRHDQHLTVENDQFTQIKHNQHLTVEGESRTLVKLDCS----SEIGGSLQQKI 569 Query: 202 SAKTIEMKSSADTRIEASAGMEVKAAASMTIKG 234 +K I + + ++A + ++A +TIK Sbjct: 570 GSKAI-YDAGTEVHLKAGNKLVLEAGNELTIKA 601 >YPO0507 [S] COG3501 Uncharacterized protein conserved in bacteria Length = 782 Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats. Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 11/140 (7%) Query: 19 RIFGVMVGIVIN-NDSANHADKPGPGRVKVKIPLMGMPE---SNWARMASWMAGKERGAF 74 ++ GV V+ +S H DK RV E S W R+ AGK G Sbjct: 362 KVPGVQSATVVGARESEVHTDKFARIRVHFHWDRYKTTEDDSSCWIRVVQAWAGKGWGVL 421 Query: 75 CLPEVDDEVLVVFENGDVNRPYVIGSLWNGKDTPPETNKDGKN-------NIRMFKSRSG 127 +P V EVLV + +GD++RP V G ++NG++ PP D N ++R + + Sbjct: 422 AMPRVGQEVLVNYVDGDLDRPMVTGIVYNGENPPPYRLPDHINYSGFVSRSLRFGQPQHA 481 Query: 128 HILQFADTEGKENITLTSAK 147 L F D G E I L + + Sbjct: 482 SQLTFDDNRGNERIMLHAER 501 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.312 0.130 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,282,256 Number of extensions: 824905 Number of successful extensions: 1017 Number of sequences better than 1.0e-05: 20 Number of HSP's gapped: 1013 Number of HSP's successfully gapped: 20 Length of query: 240 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 137 Effective length of database: 26,499,029 Effective search space: 3630366973 Effective search space used: 3630366973 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 114 (48.5 bits)