BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0569.0014.p
         (131 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM2709 [R] COG3628 Phage baseplate assembly protein W                 47   9e-06

>STM2709 [R] COG3628 Phage baseplate assembly protein W
          Length = 119

 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%)

Query: 29  DSIRESILLILSTARGERVMRPDFGCRLNELVFAPNTMSTATLLRSFIEEALQNWEPRIE 88
           D +R+S+  IL T +G R+ R ++G  L  L+  P   +    + S +  AL  WEPR+ 
Sbjct: 19  DHLRQSVRDILLTPQGSRIARREYGSLLFALIDQPQNPALRLQIMSAVYVALNRWEPRLT 78

Query: 89  VDDITVTPRSDQSQL 103
           +D IT+    D S +
Sbjct: 79  LDSITINGNFDGSMV 93


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,613,369
Number of extensions: 264435
Number of successful extensions: 624
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 625
Number of HSP's successfully gapped: 1
Length of query: 131
Length of database: 38,378,431
Length adjustment: 94
Effective length of query: 37
Effective length of database: 27,537,035
Effective search space: 1018870295
Effective search space used: 1018870295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)